# Bayesian Mixture Analysis for Metagenomic Community Profiling

## Documentation for package ‘metaMix’ version 0.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

bayes.model.aver | Bayesian Model Averaging
bayes.model.aver.explicit | Bayesian Model Averaging
generative.prob | Compute generative probabilities from BLAST output
generative.prob.nucl | Compute generative probabilities from BLAST output
parallel.temper | Parallel Tempering MCMC
parallel.temper.explicit | Parallel Tempering MCMC
parallel.temper.nucl | Parallel Tempering MCMC
parallel.temper.nucl.explicit | Parallel Tempering MCMC
reduce.space | Reduce the space of potential species by fitting the mixture model with all potential species as categories
reduce.space.explicit | Reduce the space of potential species by fitting the mixture model with all potential species as categories
step1 | Example output of generative.prob() for use in the vignette/examples
step2 | Example output of reduce.space() for use in the vignette/examples
step3 | Example output of parallel.temper() for use in the vignette/examples