accumulate_data	process.data
backward_prob	backward_prob
cjs.accumulate	cjs.accumulate
cjs.hessian	cjs.hessian
cjs.initial	cjs.initial
cjs.lnl	cjs.lnl
cjs_admb	cjs_admb
cjs_delta	cjs_delta
cjs_dmat	mvms_dmat
cjs_gamma	cjs_gamma
cjs_tmb	cjs_tmb
coef.crm	coef.crm
collapseCH	splitCH
compute.real	compute.real
compute_matrices	compute_matrices
convert.link.to.real	convert.link.to.real
create.dm	create.dm
create.dmdf	create.dmdf
create.dml	create.dm
create.fixed.matrix	create.fixed.matrix
create.links	create.links
create.model.list	crm.wrapper
crm	crm
crm.wrapper	crm.wrapper
crmlist_fromfiles	crm.wrapper
deriv.inverse.link	deriv_inverse.link
deriv_inverse.link	deriv_inverse.link
dipper	dipper
dmat_hsmm2hmm	dmat_hsmm2hmm
fix.parameters	fix.parameters
function.wrapper	function.wrapper
fx.aic	function.wrapper
fx.par.count	function.wrapper
global_decode	global_decode
hmm.lnl	HMMLikelihood
hmmDemo	hmmDemo
HMMLikelihood	HMMLikelihood
hsmm2hmm	hsmm2hmm
initiate_pi	initiate_pi
inverse.link	inverse.link
js	js
js.accumulate	js.accumulate
js.hessian	js.hessian
js.lnl	js.lnl
load.model	crm.wrapper
local_decode	local_decode
loglikelihood	R_HMMLikelihood
make.design.data	make.design.data
mcmc_mode	resight.matrix
merge.design.covariates	merge_design.covariates
merge_design.covariates	merge_design.covariates
mixed.model	mixed.model.admb
mixed.model.admb	mixed.model.admb
mixed.model.dat	mixed.model.admb
model.table	crm.wrapper
ms2_gamma	cjs_gamma
mscjs	mscjs
mscjs_tmb	mscjs_tmb
mstrata	mstrata
ms_dmat	mvms_dmat
ms_gamma	cjs_gamma
mvmscjs	mvmscjs
mvmscjs_delta	cjs_delta
mvms_design_data	mvms_design_data
mvms_dmat	mvms_dmat
naive.survival	resight.matrix
omega	omega
p.boxplot	Phi.mean
p.mean	Phi.mean
Phi.boxplot	Phi.mean
Phi.mean	Phi.mean
predict.crm	predict.crm
print.crm	print.crm
print.crmlist	print.crmlist
probitCJS	probitCJS
proc.form	proc.form
process.ch	process.ch
process.data	process.data
reals	HMMLikelihood
reindex	mixed.model.admb
rerun_crm	crm.wrapper
resight.matrix	resight.matrix
R_HMMLikelihood	R_HMMLikelihood
scale.dm	set.scale
scale.par	set.scale
sealions	sealions
set.fixed	set.fixed
set.initial	set.initial
set.scale	set.scale
setup.model	setup.model
setup.parameters	setup.parameters
setupHMM	setup.model
setup_admb	setup_admb
setup_tmb	setup_tmb
set_mvms	set_mvms
simHMM	simHMM
skagit	skagit
splitCH	splitCH
tagloss	tagloss
ums2_dmat	mvms_dmat
ums_dmat	mvms_dmat
unscale.par	set.scale
valid.parameters	valid.parameters
