Tools for Model Specification in the Latent Variable Framework

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Documentation for package ‘lavaSearch2’ version 1.3.3

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A C E F G I L M N R S T V misc

lavaSearch2-package Tools for Model Specification in the Latent Variable Framework

-- A --

addLink Add a New Link Between Two Variables in a LVM
addLink.lvm Add a New Link Between Two Variables in a LVM
addLink.lvm.reduced Add a New Link Between Two Variables in a LVM
autoplot.calibrateType1 Graphical Display of the Bias or Type 1 Error
autoplot.intDensTri 2D-display of the Domain Used to Compute the Integral
autoplot_calibrateType1 Graphical Display of the Bias or Type 1 Error

-- C --

calcDistMax Adjust the p.values Using the Quantiles of the Max Statistic
calcDistMaxBootstrap Adjust the p.values Using the Quantiles of the Max Statistic
calcDistMaxIntegral Adjust the p.values Using the Quantiles of the Max Statistic
calcType1postSelection Compute the Type 1 Error After Selection
calibrateType Simulation Study Assessing Bias and Type 1 Error
calibrateType1 Simulation Study Assessing Bias and Type 1 Error
checkData Check that Validity of the Dataset
checkData.lvm Check that Validity of the Dataset
coefByType Extract the Coefficient by Type
coefCov Extract the Coefficient by Type
coefCov.lvm Extract the Coefficient by Type
coefCov.lvmfit Extract the Coefficient by Type
coefCov.multigroup Extract the Coefficient by Type
coefExtra Extract the Coefficient by Type
coefExtra.lvm Extract the Coefficient by Type
coefExtra.lvmfit Extract the Coefficient by Type
coefExtra.multigroup Extract the Coefficient by Type
coefIndexModel Extract the Coefficient by Type
coefIndexModel.lvm Extract the Coefficient by Type
coefIndexModel.lvmfit Extract the Coefficient by Type
coefIndexModel.multigroup Extract the Coefficient by Type
coefIndexModel.multigroupfit Extract the Coefficient by Type
coefIntercept Extract the Coefficient by Type
coefIntercept.lvm Extract the Coefficient by Type
coefIntercept.lvmfit Extract the Coefficient by Type
coefIntercept.multigroup Extract the Coefficient by Type
coefRef Extract the Coefficient by Type
coefRef.lvmfit Extract the Coefficient by Type
coefReg Extract the Coefficient by Type
coefReg.lvm Extract the Coefficient by Type
coefReg.lvmfit Extract the Coefficient by Type
coefReg.multigroup Extract the Coefficient by Type
coefType Extract the Type of Each Coefficient
coefType.lvm Extract the Type of Each Coefficient
coefType.lvmfit Extract the Type of Each Coefficient
coefType.multigroup Extract the Type of Each Coefficient
coefVar Extract the Coefficient by Type
coefVar.lvm Extract the Coefficient by Type
coefVar.lvmfit Extract the Coefficient by Type
coefVar.multigroup Extract the Coefficient by Type
compare2 Test Linear Hypotheses with small sample correction
compare2.gls Test Linear Hypotheses with small sample correction
compare2.gls2 Test Linear Hypotheses with small sample correction
compare2.lm Test Linear Hypotheses with small sample correction
compare2.lm2 Test Linear Hypotheses with small sample correction
compare2.lme Test Linear Hypotheses with small sample correction
compare2.lme2 Test Linear Hypotheses with small sample correction
compare2.lvmfit Test Linear Hypotheses with small sample correction
compare2.lvmfit2 Test Linear Hypotheses with small sample correction
compareSearch Compare Methods to Identify Missing Local Dependencies in a LVM
createContrast Create Contrast matrix
createContrast.character Create Contrast matrix
createContrast.gls Create Contrast matrix
createContrast.list Create Contrast matrix
createContrast.lm Create Contrast matrix
createContrast.lme Create Contrast matrix
createContrast.lvmfit Create Contrast matrix
createContrast.mmm Create Contrast matrix

-- E --

estfun.lvmfit Extract Empirical Estimating Functions (lvmfit Object)
extractData Extract Data From a Model
extractData.coxph Extract Data From a Model
extractData.cph Extract Data From a Model
extractData.gls Extract Data From a Model
extractData.lm Extract Data From a Model
extractData.lme Extract Data From a Model
extractData.lvmfit Extract Data From a Model

-- F --

findNewLink Find all New Links Between Variables
findNewLink.lvm Find all New Links Between Variables

-- G --

getNewLink Extract the Links that Have Been Found by the modelsearch2.
getNewLink.modelsearch2 Extract the Links that Have Been Found by the modelsearch2.
getStep Extract one Step From the Sequential Procedure
getStep.modelsearch2 Extract one Step From the Sequential Procedure
getVarCov2 Reconstruct the Conditional Variance Covariance Matrix
getVarCov2.gls Reconstruct the Conditional Variance Covariance Matrix
getVarCov2.lme Reconstruct the Conditional Variance Covariance Matrix
getVarCov2.lvmfit Reconstruct the Conditional Variance Covariance Matrix
glht2 General Linear Hypothesis
glht2.lvmfit General Linear Hypothesis
glht2.mmm General Linear Hypothesis

-- I --

iid2 Extract corrected i.i.d. decomposition
iid2.gls Extract corrected i.i.d. decomposition
iid2.gls2 Extract corrected i.i.d. decomposition
iid2.lm Extract corrected i.i.d. decomposition
iid2.lm2 Extract corrected i.i.d. decomposition
iid2.lme Extract corrected i.i.d. decomposition
iid2.lme2 Extract corrected i.i.d. decomposition
iid2.lvmfit Extract corrected i.i.d. decomposition
iid2.lvmfit2 Extract corrected i.i.d. decomposition
iidJack Jackknife iid Decomposition from Model Object
iidJack.default Jackknife iid Decomposition from Model Object
initVarLink Normalize var1 and var2
initVarLinks Normalize var1 and var2
intDensTri Integrate a Gaussian/Student Density over a Triangle

-- L --

lavaSearch2 Tools for Model Specification in the Latent Variable Framework
lavaSearch2, Tools for Model Specification in the Latent Variable Framework
leverage2 Extract Leverage Values
leverage2.gls Extract Leverage Values
leverage2.gls2 Extract Leverage Values
leverage2.lm Extract Leverage Values
leverage2.lm2 Extract Leverage Values
leverage2.lme Extract Leverage Values
leverage2.lme2 Extract Leverage Values
leverage2.lvmfit Extract Leverage Values
leverage2.lvmfit2 Extract Leverage Values

-- M --

modelsearch2 Data-driven Extension of a Latent Variable Model
modelsearch2.default Data-driven Extension of a Latent Variable Model
modelsearch2.lvmfit Data-driven Extension of a Latent Variable Model

-- N --

nStep Find the Number of Steps Performed During the Sequential Testing
nStep.modelsearch2 Find the Number of Steps Performed During the Sequential Testing

-- R --

residuals2 Extract Corrected Residuals
residuals2.gls2 Extract Corrected Residuals
residuals2.lm2 Extract Corrected Residuals
residuals2.lme2 Extract Corrected Residuals
residuals2.lvmfit2 Extract Corrected Residuals

-- S --

score2 Extract The Individual Score
score2.gls Extract The Individual Score
score2.gls2 Extract The Individual Score
score2.lm Extract The Individual Score
score2.lm2 Extract The Individual Score
score2.lme Extract The Individual Score
score2.lme2 Extract The Individual Score
score2.lvmfit Extract The Individual Score
score2.lvmfit2 Extract The Individual Score
sCorrect Compute the Derivative of the Information Matrix
sCorrect.gls Compute the Derivative of the Information Matrix
sCorrect.gls2 Compute the Derivative of the Information Matrix
sCorrect.lm Compute the Derivative of the Information Matrix
sCorrect.lm2 Compute the Derivative of the Information Matrix
sCorrect.lme Compute the Derivative of the Information Matrix
sCorrect.lme2 Compute the Derivative of the Information Matrix
sCorrect.lvmfit Compute the Derivative of the Information Matrix
sCorrect.lvmfit2 Compute the Derivative of the Information Matrix
sCorrect<- Compute the Derivative of the Information Matrix
sCorrect<-.gls Compute the Derivative of the Information Matrix
sCorrect<-.gls2 Compute the Derivative of the Information Matrix
sCorrect<-.lm Compute the Derivative of the Information Matrix
sCorrect<-.lm2 Compute the Derivative of the Information Matrix
sCorrect<-.lme Compute the Derivative of the Information Matrix
sCorrect<-.lme2 Compute the Derivative of the Information Matrix
sCorrect<-.lvmfit Compute the Derivative of the Information Matrix
sCorrect<-.lvmfit2 Compute the Derivative of the Information Matrix
setLink Set a Link to a Value
setLink.lvm Set a Link to a Value
summary.modelsearch2 summary Method for modelsearch2 Objects
summary2 Summary with Small Sample Correction
summary2.gls Summary with Small Sample Correction
summary2.gls2 Summary with Small Sample Correction
summary2.lm2 Summary with Small Sample Correction
summary2.lme2 Summary with Small Sample Correction
summary2.lvmfit2 Summary with Small Sample Correction

-- T --

tryWithWarnings Run an Expression and Catch Warnings and Errors

-- V --

vcov2 Extract the Variance Covariance Matrix of the Model Parameters
vcov2.gls Extract the Variance Covariance Matrix of the Model Parameters
vcov2.gls2 Extract the Variance Covariance Matrix of the Model Parameters
vcov2.lm Extract the Variance Covariance Matrix of the Model Parameters
vcov2.lm2 Extract the Variance Covariance Matrix of the Model Parameters
vcov2.lme Extract the Variance Covariance Matrix of the Model Parameters
vcov2.lme2 Extract the Variance Covariance Matrix of the Model Parameters
vcov2.lvmfit Extract the Variance Covariance Matrix of the Model Parameters
vcov2.lvmfit2 Extract the Variance Covariance Matrix of the Model Parameters

-- misc --

.compare2 Test Linear Hypotheses with small sample correction