| dev.R | Compute Deviance for Logistic Factors |
| jackstraw | Non-Parametric Jackstraw (Wrapper) |
| jackstraw.FUN | Non-Parametric Jackstraw for a Custom Function |
| jackstraw.LFA | Non-Parametric Jackstraw for Logistic Factor Analysis |
| jackstraw.parametric | Parametric Jackstraw |
| jackstraw.PCA | Non-Parametric Jackstraw for Principal Component Analysis (PCA) |
| lfa.corpcor | Logistic Factor Analysis without C++ Dependency |
| permutationPA | Permutation Parallel Analysis |