# Spatial Inference using Integrated Nested Laplace Approximation

## Documentation for package ‘inlabru’ version 2.1.3

- DESCRIPTION file.

## Help Pages

bincount | 1D LGCP bin count simulation and comparison with data
bru | Convenient model fitting using (iterated) INLA
bru.components | bru components
bru.options | Additional bru options
countdata1 | 1-Dimensional Homogeneous Poisson example.
countdata2 | 1-Dimensional NonHomogeneous Poisson example.
countdata3a | 1-Dimensional NonHomogeneous Poisson example.
countdata3b | 1-Dimensional NonHomogeneous Poisson example.
cov2_1D | 1-Dimensional NonHomogeneous Poisson example.
cprod | Cross product of integration points
deltaIC | Summarise DIC and WAIC from 'lgcp' objects.
devel.cvmeasure | Variance and correlations measures for prediction components
E_nc1 | 1-Dimensional Homogeneous Poisson example.
E_nc2 | 1-Dimensional NonHomogeneous Poisson example.
E_nc3a | 1-Dimensional NonHomogeneous Poisson example.
E_nc3b | 1-Dimensional NonHomogeneous Poisson example.
generate | Generate samples from fitted bru and inla models
generate.bru | Sampling based on bru posteriors
gg | ggplot2 geomes for inlabru related objects
gg.data.frame | Geom for data.frame
gg.inla.mesh | Geom for inla.mesh objects
gg.inla.mesh.1d | Geom for inla.mesh.1d objects
gg.matrix | Geom for matrix
gg.prediction | Geom for predictions
gg.RasterLayer | Geom for RasterLayer objects
gg.SpatialGridDataFrame | Geom for SpatialGridDataFrame objects
gg.SpatialLines | Geom for SpatialLines objects
gg.SpatialPixels | Geom for SpatialPixels objects
gg.SpatialPixelsDataFrame | Geom for SpatialPixelsDataFrame objects
gg.SpatialPoints | Geom for SpatialPoints objects
gg.SpatialPolygons | Geom for SpatialPolygons objects
globe | Plot a globe using rgl
glplot | Render Spatial* and inla.mesh objects using RGL
glplot.inla.mesh | Visualize SpatialPoints using RGL
glplot.SpatialLines | Visualize SpatialLines using RGL
glplot.SpatialPoints | Visualize SpatialPoints using RGL
gm | ggplot geom for spatial data
gmap | Plot a map using extend of a spatial object
gorillas | Gorilla Nesting Sites.
init.tutorial | Global setting for tutorial sessions
inlabru | inlabru
int | Weighted summation (integration) of data frame subsets
ipoints | Generate integration points
lambda1_1D | 1-Dimensional Homogeneous Poisson example.
lambda2_1D | 1-Dimensional NonHomogeneous Poisson example.
lambda3_1D | 1-Dimensional NonHomogeneous Poisson example.
lgcp | Log Gaussian Cox process (LGCP) inference using INLA
like | Likelihood construction for usage with bru
mexdolphin | Pan-tropical spotted dolphins in the Gulf of Mexico.
mrsea | Marine renewables strategic environmental assessment
multiplot | Multiple ggplots on a page.
pixels | Generate 'SpatialPixels' covering an 'inla.mesh'
plot.bru | Plot method for posterior marginals estimated by bru
plot.prediction | Plot prediction using ggplot2
plotsample | Create a plot sample.
point2count | Convert a plot sample of points into one of counts.
Poisson1_1D | 1-Dimensional Homogeneous Poisson example.
Poisson2_1D | 1-Dimensional NonHomogeneous Poisson example.
Poisson3_1D | 1-Dimensional NonHomogeneous Poisson example.
predict.bru | Prediction from fitted bru model
predict.inla | Prediction from fitted inla model
pts1 | 1-Dimensional Homogeneous Poisson example.
pts2 | 1-Dimensional NonHomogeneous Poisson example.
pts3 | 1-Dimensional NonHomogeneous Poisson example.
sample.lgcp | Sample from an inhomogeneous Poisson process
seals | Seal pups
sline | Convert data frame to SpatialLinesDataFrame
spatial.to.ppp | Convert SpatialPoints and boundary polygon to spatstat ppp object
spde.posterior | Posteriors of SPDE hyper parameters and Matern correlation or covariance function.
spoly | Convert a data.frame of boundary points into a SpatialPolgonsDataFrame
stransform | Coordinate transformation for spatial objects
summary.bru | Summary for a bru fit
toygroups | Simulated 1D animal group locations and group sizes
vertices | Vertices
vertices-method | Vertices
vertices.inla.mesh | Extract vertex locations from an 'inla.mesh'