calculategphmm          Calculate GPHMM probability.
computeCounts           Compute counts for emissions and transitions.
computeGphmmParam       Compute gphmm parameters from counts.
computegphmm            Compute GPHMM log probability.
generateRandomSequences
                        Split randomly any R object for which method
                        length() has been defined into a train set and
                        a test set.
generateRead            Generate a noisy read from a true sequence.
initializeGphmm         Initial parameters for gphmm.
makeGphmmPerRead        Create a function to compute gphmm
                        probabilities during the training.
