BayesAB                 Estimte SNP Effects by MCMC - Bayes (A and B) -
                        beta
BayesCpi                Estimte SNP Effects by MCMC - Bayes C and Cpi -
                        beta
GetHCS                  Check SNP genotypes and exclude redundant SNPs
arrayAppend             Append two arrays by adding new data to top
                        array
getMAF                  Return frequency of the minor allele of a SNP
is.hwEq                 Check a SNP for Hardy-Weinberg equilibrium
is.identical            Check two SNPs for near identity across
                        genotyped samples
read.findhap            Read the output of Paul Vanraden's findhap,
                        'genotypes.filled'
snpRecode               Recode a matrix of SNP genotypes as 0, 1, and 2
snpSelect               Select genotyped individuals and SNPs based on
                        call rate, heterozygosity, HW equilibrium, or
                        minor allele frequency.
toArray                 Turn Illumina's Genome Studio 'Final Report'
                        file into an array
