% optimals.rnw
% Time-stamp: "optimals.rnw"

\documentclass[11pt]{article}

% Set margins to be narrow
\RequirePackage[left=1in,top=0.75in,right=1in,bottom=0.75in]{geometry}


%\VignetteIndexEntry{Viewing Object Colors in a Gallery}
%\VignetteEngine{knitr::knitr}

\RequirePackage{color}
\definecolor{darkblue}{rgb}{0,0,0.5}
\definecolor{blue}{rgb}{0,0,0.8}
\definecolor{lightblue}{rgb}{0.2,0.2,0.9}
\definecolor{darkred}{rgb}{0.6,0.0,0.0}
\definecolor{red}{rgb}{0.7,0,0}
\definecolor{darkgreen}{rgb}{0.0,0.4,0.0}
\definecolor{lightgray}{rgb}{0.7,0.7,0.7}
\definecolor{darkorange}{rgb}{0.75, 0.45, 0}
\definecolor{purple}{rgb}{0.65, 0, 0.75}
\definecolor{goldenrod}{rgb}{0.80, 0.61, 0.11}
\definecolor{lightyellow}{rgb}{0.98,0.94,0.83}


\RequirePackage{fancyvrb}
\RequirePackage[T1]{fontenc}
\RequirePackage{ae}       % ComputerModern Fonts
\RequirePackage{fancyhdr}
\RequirePackage{float}
\RequirePackage{hyperref}
\usepackage{lastpage}

\pagestyle{fancy}
\cfoot{page \thepage\ of \pageref{LastPage}}
\renewcommand{\headrulewidth}{0pt}

% \code mini environment ttfamily->texttt
\newcommand\code{\bgroup\@codex}
\def\@codex#1{{\color{darkred} \normalfont\ttfamily\hyphenchar\font=-1 #1}\egroup}

% This environment defines the look of R ouput
\DefineVerbatimEnvironment{Soutput}{Verbatim}{
  fontsize=\small,
  formatcom=\color{darkblue}
}

\begin{document}
% \SweaveOpts{concordance=TRUE}

\title{ {\Huge Viewing Object Colors in a Gallery} }
\author{Glenn Davis  \url{    <gdavis@gluonics.com>}}
\maketitle
% \thispagestyle{fancy}

% Setup stuff.
<<setup, echo=FALSE, results="hide">>=
require("knitr",quietly=TRUE)
opts_chunk$set(fig.path="figs/ag2-", fig.align="center",
  fig.width=7, fig.height=7, comment="")
knit_hooks$set(output = function(x, options) {
  paste('\\begin{Soutput}\n', x, '\\end{Soutput}\n', sep = '')
})
options(width=90)
par( omi=c(0,0,0,0), mai=c(0.2,0.2,0.2,0.2) )
if(!file.exists("figs")) dir.create("figs")
@

% ----------------------------------------------------------------------------
\section*{Introduction}

The goal of this package \textbf{colorSpec} vignette is to display rendered images of a popular color target
with different illuminants, both with and without chromatic adaption methods.
The figures are best viewed on a display calibrated for sRGB.
Featured functions in this vignette are: 
\code{DisplayRGBfromLinearRGB()}, 
\code{extradata()},
\code{RGBfromXYZ()},
and \code{plotPatchesRGB()}.

<<packs, echo=TRUE, message=FALSE>>=
library( colorSpec )
@

Read the target spectra.  This data has been kindly provided in CGATS format by \cite{Pascale}.
\emph{ColorChecker} is a Registered Trademark of X-Rite, and X-Rite is a Trademark. 

<<target, echo=TRUE, message=FALSE>>=
# read the Macbeth ColorCheck target
path = system.file( 'extdata/targets/CC_Avg30_spectrum_CGATS.txt', package='colorSpec') 
MacbethCC = readSpectra( path )           # MacbethCC is a 'colorSpec' object
MacbethCC = MacbethCC[ order(MacbethCC$SAMPLE_ID), ]  # still class 'colorSpec'
print( extradata(MacbethCC), row.names=F )
@

Note that \code{MacbethCC} is organized as \code{'df.row'} and contains extra data for each spectrum,
notably the coordinates of the patch rectangle.

% ----------------------------------------------------------------------------

\section*{Viewing with Illuminant D65}

Build the "material responder" from Illuminant D65 and standard CMFs:

\setcounter{figure}{0}  
<<lee10, echo=TRUE, message=FALSE >>=
D65.eye = product( D65.1nm, "artwork", xyz1931.1nm, wave='auto' )
#   calibrate so the perfect-reflecting-diffuser is the 'official XYZ'
#   scale XYZ independently
PRD = neutralMaterial( 1, wavelength(D65.eye) )
D65.eye = calibrate( D65.eye, stimulus=PRD, response=officialXYZ('D65'), method='scaling' )
@
Calculate XYZ and then RGB:
<<lee11, echo=TRUE, fig.pos="H", fig.height=5, out.width='1.0\\linewidth', fig.cap='Rendering with Illuminant D65 and xyz1931.1nm' >>=
XYZ = product( MacbethCC, D65.eye, wave='auto' )
RGB = RGBfromXYZ( XYZ, 'sRGB' )       # this is *linear* sRGB
# add the rectangle data to RGB, so they can be plotted in proper places
# in cbind() use as.data.frame.model.matrix() so RGB is a single column in obj
obj = cbind( extradata(MacbethCC), as.data.frame.model.matrix(RGB) )
#  display in proper location, and use the sRGB display transfer function
par( omi=c(0,0,0,0), mai=c(0.2,0.2,0.2,0.2) )
plotPatchesRGB( obj, gamma='sRGB', back='gray20', labels=FALSE )
obj.first = obj   # save this reference object for later
@
Here are the 8-bit device values:
<<lee13, echo=TRUE, fig.pos="H", fig.height=5, out.width='1.0\\linewidth', fig.cap='8-bit Device Values' >>=
RGB8 = round( 255 * DisplayRGBfromLinearRGB( RGB, gamma='sRGB' ) )
print( RGB8 )
@
Note that all of these patches are inside the sRGB gamut, exept for Cyan.

Another way to do the same thing is use the built-in theoretical camera
\code{BT.709.RGB} that computes sRGB directly from spectra, and has already been calibrated.
<<lee12, echo=TRUE, fig.pos="H", fig.height=5, out.width='1.0\\linewidth', fig.cap='Rendering with Illuminant D65 and Theoretical BT.709.RGB Camera' >>=
RGB = product( D65.1nm, MacbethCC, BT.709.RGB, wave='auto' )    # this is *linear* sRGB
obj = cbind( extradata(MacbethCC), as.data.frame.model.matrix(RGB) )
par( omi=c(0,0,0,0), mai=c(0.2,0.2,0.2,0.2) )
plotPatchesRGB( obj, gamma='sRGB', back='gray20', labels=FALSE )
@



\section*{Viewing with Illuminant D50}

Build the "material responder" from Illuminant D50 and standard CMFs:

<<lee20, echo=TRUE, message=FALSE >>=
D50.eye = product( D50.5nm, "artwork", xyz1931.5nm, wave='auto' )
#   calibrate so the response to the perfect-reflecting-diffuser is the 'official XYZ' of D50
#   scale XYZ independently
PRD = neutralMaterial( 1, wavelength(D50.eye) )
D50.eye = calibrate( D50.eye, stimulus=PRD, response=officialXYZ('D50'), method='scaling' )
@
Calculate XYZ and then RGB:
<<lee21, echo=TRUE, fig.pos="H", fig.height=5, out.width='1.0\\linewidth', fig.cap='Rendering with Illuminant D50 and xyz1931.5nm' >>=
XYZ = product( MacbethCC, D50.eye, wave='auto' )
RGB = RGBfromXYZ( XYZ, 'sRGB' )       # this is *linear* sRGB
obj = cbind( extradata(MacbethCC), as.data.frame.model.matrix(RGB) )
par( omi=c(0,0,0,0), mai=c(0.2,0.2,0.2,0.2) )
plotPatchesRGB( obj, gamma='sRGB', back='gray20', labels=FALSE )
@
Since D50 is yellower than D65, the result has a yellow cast.
Start over, but this time calibrate and adapt to D65 using the Bradford method.
<<lee22, echo=TRUE, fig.pos="H", fig.height=5, out.width='1.0\\linewidth', fig.cap='Rendering with Illuminant D50 and xyz1931.5nm, but then adapted to D65' >>=
D50.eye = product( D50.5nm, "artwork", xyz1931.5nm, wave='auto' )
#  calibrate so the response to the perfect-reflecting-diffuser is the 'official XYZ' of D65
#  with this chromatic adaption the destination XYZ is a 3x3 matrix times the source XYZ
PRD = neutralMaterial( 1, wavelength(D50.eye) )
XYZ.D65 = officialXYZ('D65')
D50toD65.eye = calibrate( D50.eye, stimulus=PRD, response=XYZ.D65, method='Bradford' )
XYZ = product( MacbethCC, D50toD65.eye, wave='auto' )
RGB = RGBfromXYZ( XYZ, 'sRGB' )       # this is *linear* sRGB
obj = cbind( extradata(MacbethCC), as.data.frame.model.matrix(RGB) )
par( omi=c(0,0,0,0), mai=c(0.2,0.2,0.2,0.2) )
plotPatchesRGB( obj, gamma='sRGB', back='gray20', labels=FALSE )
@
The white-balance here is much improved.
But it hard to compare colors in this figure with the ones way back in Figure 1.
So combine the original D65 rendering in Figure 1 with this D50 rendering
in Figure 4 by splitting each square into 2 triangles.
We can do this by setting \code{add=T} in the second plot.
<<lee23, echo=TRUE, fig.pos="H", fig.height=5, out.width='1.0\\linewidth', fig.cap='Rendering with both D65 (Figure 1), and D50 then adapted to D65 (Figure 4)' >>=
par( omi=c(0,0,0,0), mai=c(0.2,0.2,0.2,0.2) )
plotPatchesRGB( obj.first, gamma='sRGB', back='gray20', labels=F )
plotPatchesRGB( obj, gamma='sRGB', labels=F, shape='bottomright', add=T )
@
The top-left triangle has the color from Figure 1 
and the bottom-right triangle has the color from Figure 4.
There is a noticeable difference in the \textbf{Red} and \textbf{Magenta} patches.


\section*{A Rendering with a Scanner}

Here we calculate a rendering on an RGB scanner.
This is not really a gallery situation, but illustrates the similarity of the 2 RGB calculations.

<<lee30, echo=TRUE,  fig.pos="H", fig.height=5, out.width='1.0\\linewidth', fig.cap='Rendering with a generic  RGB scanner' >>=
#   Build a scanner from Illuminant F11 and the Flea2 camera
scanner = product( subset(Fs.5nm,'F11'), 'artwork', Flea2.RGB, wave='auto' )
#   calibrate scanner so the response to the perfect-reflecting-diffuser is RGB=(1,1,1)
#   set the RGB gains independently
PRD = neutralMaterial( 1, wavelength(scanner) )
scanner = calibrate( scanner, stimulus=PRD, response=1, method='scaling' )
RGB = product( MacbethCC, scanner, wave='auto' )       # this RGB is not sRGB
obj = cbind( extradata(MacbethCC), as.data.frame.model.matrix(RGB) )
par( omi=c(0,0,0,0), mai=c(0.2,0.2,0.2,0.2) )
plotPatchesRGB( obj, gamma='sRGB', back='gray20', labels=FALSE )
@
The colors are too pale; this time \code{Cyan} has a substantial Red signal.
Some sort of color management is necessary in this scanner to improve accuracy.

For an interactive viewer along these lines, see \cite{Lindbloom}.


% \pagebreak

\bibliographystyle{apalike}
\bibliography{gallery}


% ----------------------------------------------------------------------------


\section*{Appendix}
This document was prepared \today \quad with the following configuration:
<<finish, echo=FALSE, results="asis">>=
knit_hooks$set(output = function(x, options) { x })
toLatex(sessionInfo(), locale=FALSE)
@


\end{document}
