JMatrixCentered         J matrix for centered variance estimate
JMatrixUncentered       Uncentered J matrix
MPLE                    Logistic autoregression
MPLEinternal            Multinomial regression
adjMat                  Spatial adjacency matrix
centeredLogLikGrad      Centered model gradient
centeredLogLikHess      Centered model hessian
centeredLogLikelihood   Centered model log pseudolikelihood
chol_psd                Cholesky decomposition for positive
                        semidefinite matrix
criterionFit            Minimize criterion (AIC or BIC)
indsFunction            Get indices of relevant component of theta
                        matrix
logLikelihood           Compute log likelihood
multProb                Multinomial probabilities
multinomialBCD          Block coordinate descent
plotGrid                Visualize response values on a grid
sandwichVariance        Compute sandwich variance estimate
significanceTest        Significance tests for
                        autologistic/automultinomial models
simulateData            Simulate data
totalX                  Add columns to X matrix
unStandardize           Unstandardize coefficients
uncenteredLogLikGrad    Uncentered gradient
uncenteredLogLikHess    Uncentered hessian
