GO_slim_id              GO slim IDs
TROM-package            Transcriptome Overlap Measure
bs.trom                 Between-species transcriptome mapping
choose.z                Choose the suggested threshold of Z-scores
find.top.GO.slim.terms
                        Find top enriched GO slim terms
find.top.GO.terms       Find top enriched GO terms
heatmap.3               Plot TROM scores in a heatmap.
select.associated.genes
                        Select the associated genes for biological
                        samples of a species
select.associated.orthologs
                        Select the associated genes for biological
                        samples of a species among the genes with
                        orthologs in the other species
ws.trom                 Within-species transcriptome mapping
ws.trom.orthologs       Within-species transcriptome mapping using
                        ortholog genes
