SpaDES.core-package	SpaDES.core-package
$	objects
$,simList-method	objects
$<-	objects
$<-,simList-method	objects
.addDepends	addDepends
.addDepends,.simList,.moduleDeps-method	addDepends
.addTagsToOutput,simList-method	addTagsToOutput
.cacheMessage,simList-method	cacheMessage
.callingFrameTimeunit	namespacing
.callingModuleName	namespacing
.callingModuleName,.simList-method	namespacing
.checkCacheRepo,list-method	checkCacheRepo
.checkpointSave	checkpoint
.coreModules	coreModules
.depsLoadOrder	depsLoadOrder
.depsLoadOrder,simList,igraph-method	depsLoadOrder
.depsPruneEdges	depsPruneEdges
.depsPruneEdges,data.table-method	depsPruneEdges
.digest	digest
.digest,character-method	digest
.emptyEventList	emptyEventList
.emptyEventList,missing,missing,missing,missing-method	emptyEventList
.emptyEventList,numeric,character,character,numeric-method	emptyEventList
.emptyEventListCols	emptyEventList
.emptyEventListDT	emptyEventList
.emptyMetadata	emptyMetadata
.emptyMetadata,missing-method	emptyMetadata
.fileEdit	fileEdit
.fileExtensions	loadFiles
.fileTableIn	fileTable
.fileTableIn,missing-method	fileTable
.fileTableInCols	fileTable
.fileTableOut	fileTable
.fileTableOut,missing-method	fileTable
.fileTableOutCols	fileTable
.fillInputRows	fillInputRows
.fillOutputRows	fillOutputRows
.findObjects	findObjects
.findSimList	findSimList
.first	priority
.highest	priority
.inputObjects	inputObjects
.inputObjects,missing-method	inputObjects
.last	priority
.lowest	priority
.modifySearchPath	modifySearchPath
.moduleDeps	moduleDeps-class
.moduleDeps-class	moduleDeps-class
.normal	priority
.objSizeInclEnviros,simList-method	objSizeInclEnviros
.outputObjects	inputObjects
.outputObjects,missing-method	inputObjects
.parseElems,simList-method	parseElems
.parseModule	parseModule
.parseModule,simList,list-method	parseModule
.parseModulePartial	parseModule
.parseModulePartial,missing,missing,character,character-method	parseModule
.parseModulePartial,simList,list,missing,character-method	parseModule
.paths	setPaths
.pkgEnv	pkgEnv
.preDigestByClass,simList-method	preDigestByClass
.prepareOutput,simList-method	prepareOutput
.quickCheck	quickCheck
.robustDigest,simList-method	robustDigest
.saveFileExtensions	loadFiles
.sim2gantt	sim2gantt
.sim2gantt,simList,numeric,character,numeric-method	sim2gantt
.simDeps	simDeps-class
.simDeps-class	simDeps-class
.simList	simList-class
.simList-class	simList-class
.singleEventListDT	emptyEventList
.spadesTimes	timeConversion
.tagsByClass,simList-method	tagsByClass
.unparsed	unparsed
.unparsed,list-method	unparsed
append_attr	append_attr
append_attr,list,list-method	append_attr
Cache	robustDigest
cachePath	simList-accessors-paths
cachePath,.simList-method	simList-accessors-paths
cachePath<-	simList-accessors-paths
cachePath<-,.simList-method	simList-accessors-paths
checkModule	checkModule
checkModule,character,character-method	checkModule
checkModule,character,missing-method	checkModule
checkModuleLocal	checkModuleLocal
checkModuleLocal,character,ANY,ANY-method	checkModuleLocal
checkModuleLocal,character,character,character-method	checkModuleLocal
checkObject	checkObject
checkObject,missing,ANY,missing,ANY-method	checkObject
checkObject,simList,character,missing,character-method	checkObject
checkObject,simList,character,missing,missing-method	checkObject
checkObject,simList,missing,ANY,missing-method	checkObject
checkObject,simList,missing,Raster,character-method	checkObject
checkParams	checkParams
checkParams,simList,list,list,character-method	checkParams
checkpointFile	checkpoint
checkpointFile,.simList-method	checkpoint
checkpointFile<-	checkpoint
checkpointFile<-,.simList-method	checkpoint
checkpointInterval	checkpoint
checkpointInterval,.simList-method	checkpoint
checkpointInterval<-	checkpoint
checkpointInterval<-,.simList-method	checkpoint
checkpointLoad	checkpoint
checksums	checksums
checksums,character,character,logical-method	checksums
checksums,character,character,missing-method	checksums
checkTimeunit	timeConversion
checkTimeunit,character,environment-method	timeConversion
checkTimeunit,character,missing-method	timeConversion
classFilter	classFilter
classFilter,character,character,character,environment-method	classFilter
classFilter,character,character,character,missing-method	classFilter
classFilter,character,character,missing,environment-method	classFilter
classFilter,character,character,missing,missing-method	classFilter
completed	simList-accessors-events
completed,.simList,character-method	simList-accessors-events
completed,.simList,missing-method	simList-accessors-events
completed<-	simList-accessors-events
completed<-,.simList-method	simList-accessors-events
convertTimeunit	timeConversion
Copy,simList-method	Copy
copyModule	copyModule
copyModule,character,character,character-method	copyModule
copyModule,character,character,missing-method	copyModule
createsOutput	createsOutput
createsOutput,ANY,ANY,ANY-method	createsOutput
createsOutput,character,character,character-method	createsOutput
current	simList-accessors-events
current,.simList,character-method	simList-accessors-events
current,.simList,missing-method	simList-accessors-events
current<-	simList-accessors-events
current<-,.simList-method	simList-accessors-events
currentModule	namespacing
currentModule,.simList-method	namespacing
dataPath	simList-accessors-paths
dataPath,.simList-method	simList-accessors-paths
dday	spadesTime
defineModule	defineModule
defineModule,.simList,list-method	defineModule
defineParameter	defineParameter
defineParameter,character,character,ANY,ANY,ANY,character-method	defineParameter
defineParameter,character,character,ANY,missing,missing,character-method	defineParameter
defineParameter,missing,missing,missing,missing,missing,missing-method	defineParameter
depends	simList-accessors-modules
depends,.simList-method	simList-accessors-modules
depends<-	simList-accessors-modules
depends<-,.simList-method	simList-accessors-modules
depsEdgeList	depsEdgeList
depsEdgeList,simList,logical-method	depsEdgeList
depsEdgeList,simList,missing-method	depsEdgeList
depsGraph	depsGraph
depsGraph,simList,logical-method	depsGraph
depsGraph,simList,missing-method	depsGraph
dhour	spadesTime
dmonth	spadesTime
dmonths	spadesTime
dmonths,numeric-method	spadesTime
dNA	spadesTime
dNA,ANY-method	spadesTime
doEvent	doEvent
doEvent.checkpoint	checkpoint
downloadData	downloadData
downloadData,character,character,logical-method	downloadData
downloadData,character,character,missing-method	downloadData
downloadData,character,missing,logical-method	downloadData
downloadData,character,missing,missing-method	downloadData
downloadModule	downloadModule
downloadModule,character,ANY,ANY,ANY,ANY,ANY-method	downloadModule
downloadModule,character,character,character,character,logical,logical-method	downloadModule
downloadModule,character,missing,missing,missing,missing,missing-method	downloadModule
dsecond	spadesTime
dweek	spadesTime
dweeks	spadesTime
dweeks,numeric-method	spadesTime
dyear	spadesTime
dyears	spadesTime
dyears,numeric-method	spadesTime
emptyEventList	emptyEventList
end..simList	simList-accessors-times
end<-	simList-accessors-times
end<-,.simList-method	simList-accessors-times
envir	simList-accessors-envir
envir,simList-method	simList-accessors-envir
envir<-	simList-accessors-envir
envir<-,simList-method	simList-accessors-envir
eventDiagram	eventDiagram
eventDiagram,simList,missing,character-method	eventDiagram
eventDiagram,simList,missing,missing-method	eventDiagram
eventDiagram,simList,numeric,character-method	eventDiagram
events	simList-accessors-events
events,.simList,character-method	simList-accessors-events
events,.simList,missing-method	simList-accessors-events
events<-	simList-accessors-events
events<-,.simList-method	simList-accessors-events
expectsInput	expectsInput
expectsInput,ANY,ANY,ANY,ANY-method	expectsInput
expectsInput,character,character,character,character-method	expectsInput
expectsInput,character,character,character,missing-method	expectsInput
experiment	experiment
experiment,simList-method	experiment
fileExt	fileExt
fileName	fileName
findObjects	findObjects
G	globals
G,.simList-method	globals
G<-	globals
G<-,.simList-method	globals
ganttStatus	ganttStatus
ganttStatus,character-method	ganttStatus
getModuleVersion	getModuleVersion
getModuleVersion,character,character-method	getModuleVersion
getModuleVersion,character,missing-method	getModuleVersion
getPaths	setPaths
globals	globals
globals,.simList-method	globals
globals<-	globals
globals<-,.simList-method	globals
initialize,simList-method	initialize-method
inputArgs	simList-accessors-inout
inputArgs,.simList-method	simList-accessors-inout
inputArgs<-	simList-accessors-inout
inputArgs<-,.simList-method	simList-accessors-inout
inputPath	simList-accessors-paths
inputPath,.simList-method	simList-accessors-paths
inputPath<-	simList-accessors-paths
inputPath<-,.simList-method	simList-accessors-paths
inputs	simList-accessors-inout
inputs,.simList-method	simList-accessors-inout
inputs<-	simList-accessors-inout
inputs<-,.simList-method	simList-accessors-inout
inSeconds	timeConversion
loadFiles	loadFiles
loadFiles,missing,ANY-method	loadFiles
loadFiles,missing,missing-method	loadFiles
loadFiles,simList,missing-method	loadFiles
loadPackages	loadPackages
loadPackages,character-method	loadPackages
loadPackages,list-method	loadPackages
loadPackages,NULL-method	loadPackages
ls,simList-method	ls-method
ls.simList	ls-method
ls.str,missing,simList-method	ls_str-method
ls.str,simList,missing-method	ls_str-method
ls.str.simList	ls_str-method
maxTimeunit	maxTimeunit
maxTimeunit,simList-method	maxTimeunit
minTimeunit	minTimeunit
minTimeunit,list-method	minTimeunit
minTimeunit,simList-method	minTimeunit
moduleCoverage	moduleCoverage
moduleCoverage,character,character-method	moduleCoverage
moduleCoverage,character,missing-method	moduleCoverage
moduleDefaults	moduleDefaults
moduleDiagram	moduleDiagram
moduleDiagram,simList,character,logical-method	moduleDiagram
moduleDiagram,simList,missing,ANY-method	moduleDiagram
moduleGraph	moduleGraph
moduleGraph,simList,logical-method	moduleGraph
moduleGraph,simList,missing-method	moduleGraph
moduleMetadata	moduleMetadata
moduleMetadata,ANY,missing,simList-method	moduleMetadata
moduleMetadata,character,character,missing-method	moduleMetadata
moduleMetadata,character,missing,missing-method	moduleMetadata
modulePath	simList-accessors-paths
modulePath,.simList-method	simList-accessors-paths
modulePath<-	simList-accessors-paths
modulePath<-,.simList-method	simList-accessors-paths
modules	simList-accessors-modules
modules,.simList-method	simList-accessors-modules
modules<-	simList-accessors-modules
modules<-,.simList-method	simList-accessors-modules
moduleVersion	moduleVersion
moduleVersion,character,character,missing-method	moduleVersion
moduleVersion,character,missing,missing-method	moduleVersion
moduleVersion,character,missing,simList-method	moduleVersion
newModule	newModule
newModule,character,character-method	newModule
newModule,character,missing-method	newModule
newModuleCode	newModuleCode
newModuleCode,character,character,logical,character,character-method	newModuleCode
newModuleDocumentation	newModuleDocumentation
newModuleDocumentation,character,character,logical,character,character-method	newModuleDocumentation
newModuleDocumentation,character,character,missing,ANY,ANY-method	newModuleDocumentation
newModuleDocumentation,character,missing,logical,ANY,ANY-method	newModuleDocumentation
newModuleDocumentation,character,missing,missing,ANY,ANY-method	newModuleDocumentation
newModuleTests	newModuleTests
newModuleTests,character,character,logical-method	newModuleTests
newProgressBar	progressBar
objectDiagram	objectDiagram
objectDiagram,simList-method	objectDiagram
objects,simList-method	ls-method
objects.simList	ls-method
objs	objects
objs,simList-method	objects
objs<-	objects
objs<-,simList-method	objects
openModules	openModules
openModules,character,character-method	openModules
openModules,character,missing-method	openModules
openModules,missing,character-method	openModules
openModules,missing,missing-method	openModules
openModules,simList,missing-method	openModules
outputArgs	simList-accessors-inout
outputArgs,.simList-method	simList-accessors-inout
outputArgs<-	simList-accessors-inout
outputArgs<-,.simList-method	simList-accessors-inout
outputPath	simList-accessors-paths
outputPath,.simList-method	simList-accessors-paths
outputPath<-	simList-accessors-paths
outputPath<-,.simList-method	simList-accessors-paths
outputs	simList-accessors-inout
outputs,.simList-method	simList-accessors-inout
outputs<-	simList-accessors-inout
outputs<-,.simList-method	simList-accessors-inout
P	params
packages	packages
packages,ANY-method	packages
paddedFloatToChar	paddedFloatToChar
parameters	params
parameters,.simList-method	params
params	params
params,.simList-method	params
params<-	params
params<-,.simList-method	params
paths	simList-accessors-paths
paths,.simList-method	simList-accessors-paths
paths<-	simList-accessors-paths
paths<-,.simList-method	simList-accessors-paths
Plot,simList-method	Plot
POM	POM
POM,simList,character-method	POM
priority	priority
progressInterval	progress
progressInterval,.simList-method	progress
progressInterval<-	progress
progressInterval<-,.simList-method	progress
progressType	progress
progressType,.simList-method	progress
progressType<-	progress
progressType<-,.simList-method	progress
rasterToMemory	rasterToMemory
rasterToMemory,ANY-method	rasterToMemory
remoteFileSize	remoteFileSize
rndstr	rndstr
rndstr,missing,missing,logical-method	rndstr
rndstr,missing,missing,missing-method	rndstr
rndstr,missing,numeric,logical-method	rndstr
rndstr,missing,numeric,missing-method	rndstr
rndstr,numeric,missing,logical-method	rndstr
rndstr,numeric,missing,missing-method	rndstr
rndstr,numeric,numeric,logical-method	rndstr
rndstr,numeric,numeric,missing-method	rndstr
saveFiles	saveFiles
saveSimList	loadFiles
scheduleEvent	scheduleEvent
setPaths	setPaths
setProgressBar	progressBar
show,simList-method	show-method
simInit	simInit
simInit,ANY,ANY,ANY,ANY,ANY,ANY,ANY,ANY-method	simInit
simInit,ANY,ANY,ANY,character,ANY,ANY,ANY,ANY-method	simInit
simInit,ANY,ANY,character,ANY,ANY,ANY,ANY,ANY-method	simInit
simInit,list,list,list,list,list,data.frame,data.frame,character-method	simInit
simList	simList-class
simList-accessors-envir	simList-accessors-envir
simList-accessors-events	simList-accessors-events
simList-accessors-inout	simList-accessors-inout
simList-accessors-modules	simList-accessors-modules
simList-accessors-objects	objects
simList-accessors-params	params
simList-accessors-paths	simList-accessors-paths
simList-accessors-times	simList-accessors-times
simList-class	simList-class
simList_	simList_-class
simList_-class	simList_-class
spades	spades
spades,ANY,ANY,ANY,logical-method	spades
spades,simList,ANY,ANY,missing-method	spades
SpaDES.core	SpaDES.core-package
spadesClasses	spades-classes
spadesTimes	timeConversion
start..simList	simList-accessors-times
start<-	simList-accessors-times
start<-,.simList-method	simList-accessors-times
time..simList	simList-accessors-times
time<-	simList-accessors-times
time<-,.simList-method	simList-accessors-times
times	simList-accessors-times
times,.simList-method	simList-accessors-times
times<-	simList-accessors-times
times<-,.simList-method	simList-accessors-times
timeunit	simList-accessors-times
timeunit,.simList-method	simList-accessors-times
timeunit<-	simList-accessors-times
timeunit<-,.simList-method	simList-accessors-times
timeunits	simList-accessors-times
timeunits,.simList-method	simList-accessors-times
updateList	updateList
updateList,list,list-method	updateList
updateList,list,NULL-method	updateList
updateList,NULL,list-method	updateList
updateList,NULL,NULL-method	updateList
zipModule	zipModule
zipModule,character,character,character-method	zipModule
zipModule,character,character,missing-method	zipModule
zipModule,character,missing,character-method	zipModule
zipModule,character,missing,missing-method	zipModule
[[	objects
[[,simList,ANY,ANY-method	objects
[[<-	objects
[[<-,simList,ANY,ANY,ANY-method	objects
