Package: Seurat
Version: 2.2.1
Date: 2018-02-14
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
Authors@R: c(
  person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'aut'),
  person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut'),
  person(given = 'Paul', family = 'Hoffman', email = 'seuratpackage@gmail.com', role = c('aut', 'cre')),
  person(given = 'Jeff', family = 'Farrell', email = 'jfarrell@g.harvard.edu', role = 'ctb'),
  person(given = 'Shiwei', family = 'Zheng', email = 'szheng@nygenome.org', role = 'ctb'),
  person(given = 'Christoph', family = 'Hafemeister', email = 'chafemeister@nygenome.org', role = 'ctb'),
  person(given = 'Patrick', family = 'Roelli', email = 'proelli@nygenome.org', role = 'ctb')
  )
URL: http://www.satijalab.org/seurat,
        https://github.com/satijalab/seurat
BugReports: https://github.com/satijalab/seurat/issues
Depends: R (>= 3.2.0), ggplot2, cowplot, Matrix,
SystemRequirements: Java (>= 6)
Imports: methods, ROCR, stringr, mixtools, lars, ica, tsne, Rtsne, fpc,
        ape, VGAM, pbapply, igraph, FNN, caret, dplyr, RColorBrewer,
        MASS, irlba, reshape2, gridExtra, gplots, gdata, Rcpp, tclust,
        ranger, dtw, SDMTools, plotly, diffusionMap, Hmisc, tidyr,
        ggridges, metap
LinkingTo: Rcpp, RcppEigen, RcppProgress
License: GPL-3 | file LICENSE
LazyData: true
Collate: 'RcppExports.R' 'alignment.R' 'seurat.R'
        'cluster_determination.R' 'cluster_determination_internal.R'
        'cluster_validation.R' 'data.R' 'deprecated_functions.R'
        'differential_expression.R'
        'differential_expression_internal.R' 'dimensional_reduction.R'
        'dimensional_reduction_internal.R'
        'dimensional_reduction_utilities.R' 'interaction.R'
        'jackstraw.R' 'jackstraw_internal.R' 'multi_modal.R'
        'plotting.R' 'plotting_internal.R' 'plotting_utilities.R'
        'preprocessing.R' 'preprocessing_internal.R'
        'printing_utilities.R' 'scoring.R' 'snn.R' 'spatial.R'
        'spatial_internal.R' 'tSNE_project.R' 'utilities.R'
        'utilities_internal.R'
RoxygenNote: 6.0.1
Suggests: testthat, SummarizedExperiment, MAST, DESeq2
NeedsCompilation: yes
Packaged: 2018-02-14 19:01:41 UTC; paul
Author: Rahul Satija [aut],
  Andrew Butler [aut],
  Paul Hoffman [aut, cre],
  Jeff Farrell [ctb],
  Shiwei Zheng [ctb],
  Christoph Hafemeister [ctb],
  Patrick Roelli [ctb]
Maintainer: Paul Hoffman <seuratpackage@gmail.com>
Repository: CRAN
Date/Publication: 2018-02-14 19:53:45 UTC
Built: R 3.3.3; x86_64-w64-mingw32; 2018-03-20 10:38:50 UTC; windows
Archs: i386, x64
