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| SCORPIUS-deprecated-package | Deprecated function(s) in the SCORPIUS package |
| SCORPIUS-package | SCORPIUS: Trajectory inference from single-cell RNA sequencing data. |
| apply.quant.scale | Deprecated function(s) in the SCORPIUS package |
| apply.scale | Deprecated function(s) in the SCORPIUS package |
| apply_quantile_scale | Apply a quantile scale. |
| apply_uniform_scale | Apply a uniform scale |
| correlation.distance | Deprecated function(s) in the SCORPIUS package |
| correlation_distance | Correlation distance |
| draw.trajectory.heatmap | Deprecated function(s) in the SCORPIUS package |
| draw.trajectory.plot | Deprecated function(s) in the SCORPIUS package |
| draw_trajectory_heatmap | Draw time-series heatmap |
| draw_trajectory_plot | Visualise SCORPIUS |
| euclidean.distance | Deprecated function(s) in the SCORPIUS package |
| euclidean_distance | (Pairwise) Euclidean distances between two sets of samples |
| evaluate.dim.red | Deprecated function(s) in the SCORPIUS package |
| evaluate.trajectory | Deprecated function(s) in the SCORPIUS package |
| evaluate_dim_red | Evaluate the dimensionality reduction |
| evaluate_trajectory | Evaluate the inferred timeline |
| extract.modules | Deprecated function(s) in the SCORPIUS package |
| extract_modules | Extract modules of features |
| gene.importances | Deprecated function(s) in the SCORPIUS package |
| generate.dataset | Deprecated function(s) in the SCORPIUS package |
| generate_dataset | Generate a synthetic dataset |
| gene_importances | Calculate the importance of a feature |
| ginhoux | scRNA-seq data of dendritic cell progenitors. |
| infer.initial.trajectory | Deprecated function(s) in the SCORPIUS package |
| infer.trajectory | Deprecated function(s) in the SCORPIUS package |
| infer_initial_trajectory | Infer an initial trajectory through space |
| infer_trajectory | Infer linear trajectory through space |
| knn | k Nearest Neighbour indices and distances |
| knn.distances | Deprecated function(s) in the SCORPIUS package |
| knn_distances | k Nearest Neighbour distances |
| outlier.filter | Deprecated function(s) in the SCORPIUS package |
| outlierness | Outlierness |
| outlier_filter | Outlier detection |
| quant.scale | Deprecated function(s) in the SCORPIUS package |
| reduce.dimensionality | Deprecated function(s) in the SCORPIUS package |
| reduce.dimensionality.landmarked | Deprecated function(s) in the SCORPIUS package |
| reduce_dimensionality | Dimensionality reduction |
| reduce_dimensionality_landmarked | Multidimensional scaling with landmarks |
| rescale.and.center | Deprecated function(s) in the SCORPIUS package |
| reverse.trajectory | Deprecated function(s) in the SCORPIUS package |
| reverse_trajectory | Reverse a trajectory |
| scale_quantile | Calculate and apply a quantile scale |
| scale_uniform | Scaling and centering of matrix-like objects |
| SCORPIUS | SCORPIUS: Trajectory inference from single-cell RNA sequencing data. |
| SCORPIUS-deprecated | Deprecated function(s) in the SCORPIUS package |