SCORPIUS                SCORPIUS: Trajectory inference from single-cell
                        RNA sequencing data.
SCORPIUS-deprecated     Deprecated function(s) in the SCORPIUS package
apply_quantile_scale    Apply a quantile scale.
apply_uniform_scale     Apply a uniform scale
correlation_distance    Correlation distance
draw_trajectory_heatmap
                        Draw time-series heatmap
draw_trajectory_plot    Visualise SCORPIUS
euclidean_distance      (Pairwise) Euclidean distances between two sets
                        of samples
evaluate_dim_red        Evaluate the dimensionality reduction
evaluate_trajectory     Evaluate the inferred timeline
extract_modules         Extract modules of features
gene_importances        Calculate the importance of a feature
generate_dataset        Generate a synthetic dataset
ginhoux                 scRNA-seq data of dendritic cell progenitors.
infer_initial_trajectory
                        Infer an initial trajectory through space
infer_trajectory        Infer linear trajectory through space
knn                     k Nearest Neighbour indices and distances
knn_distances           k Nearest Neighbour distances
outlier_filter          Outlier detection
outlierness             Outlierness
reduce_dimensionality   Dimensionality reduction
reduce_dimensionality_landmarked
                        Multidimensional scaling with landmarks
reverse_trajectory      Reverse a trajectory
scale_quantile          Calculate and apply a quantile scale
scale_uniform           Scaling and centering of matrix-like objects
