# Facilities for Simulating from ODE-Based Models

## Documentation for package ‘RxODE’ version 0.6-1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.

## Help Pages

A C D E F G M P R S T U W misc

## -- A --

add.dosing | Add dosing to eventTable
add.sampling | Add sampling to eventTable
arrange_ | arrange_ for 'solveRxDll' object
arrange_.solveRxDll | arrange_ for 'solveRxDll' object

## -- C --

coef.RxCompilationManager | Return the RxODE coefficients
coef.rxDll | Return the RxODE coefficients
coef.RxODE | Return the RxODE coefficients
coef.solveRxODE | Return the RxODE coefficients

## -- D --

distinct_ | distinct_ for 'solveRxDll' object
distinct_.solveRxDll | distinct_ for 'solveRxDll' object

## -- E --

eventTable | Create an event table object

## -- F --

filter_ | filter_ for 'solveRxDll' object
filter_.solveRxDll | filter_ for 'solveRxDll' object

## -- G --

gather_ | gather_ for 'solveRxDll' object
gather_.solveRxDll | gather_ for 'solveRxDll' object
genShinyApp.template | Generate an example (template) of a dosing regimen shiny app
group_by_ | group_by_ for 'solveRxDll' object
group_by_.solveRxDll | group_by_ for 'solveRxDll' object

## -- M --

mutate_ | mutate_ for 'solveRxDll' object
mutate_.solveRxDll | mutate_ for 'solveRxDll' object

## -- P --

predict.RxODE | Predict an RxODE object
print.rxCoefSolve | Print the rxCoefSolve object
print.RxCompilationManager | Print information about the RxODE object.
print.RxODE | Print information about the RxODE object.

## -- R --

rename_ | rename_ for 'solveRxDll' object
rename_.solveRxDll | rename_ for 'solveRxDll' object
rxAddReturn | Add a return statment to a function.
rxChain | rxChain Chain or add item to solved system of equations
rxClean | Cleanup anonymous DLLs
rxCompile | Compile a model if needed
rxCompile.character | Compile a model if needed
rxCompile.rxDll | Compile a model if needed
rxCompile.RxODE | Compile a model if needed
rxCoutEcho | Echo cout to console for a number
rxDelete | Delete the DLL for the model
rxDfdy | Jacobain and parameter derivates
rxDllLoaded | Determine if the rxDll is loaded or not.
rxInv | Invert matrix using Rcpp Armadilo.
rxKahanSum | Using the Kahan method, take a more accurate sum
rxLhs | Left handed Variables
rxLoad | Load the DLL for the object
rxLogifyModel | Takes a model and expands it to log multiplication
rxNeumaierSum | Using the Neumaier method, take a more accurate sum
rxNorm | Get the normalized model
RxODE | Create an ODE-based model specification
rxOptions | Options for RxODE
rxPairwiseSum | Return an accurate floating point sum of values
rxParam | Parameters specified by the model
rxParams | Parameters specified by the model
rxPermissive | Permissive or Strict RxODE sytax options
rxProd | Using RxODE's default method, take a product
rxPythonFsum | Return an accurate floating point sum of values
rxRmPrint | Remove print statements
rxRmSens | Remove sensitivity equations
rxRtoolsBaseWin | Return Rtools base
rxSetProd | Choose the type of product to use in RxODE. These are used in the RxODE 'prod' blocks
rxSetSum | Choose the type of sums to use for RxODE.
rxSetupMemoize | This setups the memoized functions.
rxSolve | Solves a ODE equation
rxSolve.RxODE | Solves a ODE equation
rxSolve.solveRxODE | Solves a ODE equation
rxState | State variables
rxStrict | Permissive or Strict RxODE sytax options
rxSum | Using RxODE's default method, take a sum
rxSumProdModel | Recast model in terms of sum/prod
rxSymDiag | Get the theta numbers for the diagonal elements.
rxSymInv | Get Omega and Omega^-1 and derivatives
rxSymPyFix | Fix SymPy expressions to be R parsable expressions
rxSymPyJacobian | Calculate the full Jacobian for a model
rxSymPySensitivity | Calculate the sensitivity equations for a model
rxSymPyVersion | Return the version of SymPy that is running
rxSyncOptions | Sync options with RxODE varaibles
rxTest | Validate RxODE
rxTrans | Translate the model to C code if needed
rxTrans.character | Translate the model to C code if needed
rxTrans.default | Translate the model to C code if needed
rxUnload | Unload the DLL for the object
rxValidate | Validate RxODE
rxWinPythonSetup | Setup Python and SymPy for windows
rxWinRtoolsPath | Setup Rtools path
rxWinSetup | Setup Windows components for RxODE

## -- S --

sample_frac | sample_frac for 'solveRxDll' object
sample_frac.solveRxDll | sample_frac for 'solveRxDll' object
sample_n | sample_n for 'solveRxDll' object
sample_n.solveRxDll | sample_n for 'solveRxDll' object
select_ | select_ for 'solveRxDll' object
select_.solveRxDll | select_ for 'solveRxDll' object
separate_ | separate_ for 'solveRxDll' object
separate_.solveRxDll | separate_ for 'solveRxDll' object
slice_ | slice_ for 'solveRxDll' object
slice_.solveRxDll | slice_ for 'solveRxDll' object
solve.character | Solve RxODE objects
solve.RxCompilationManager | Solve RxODE objects
solve.rxDll | Solve RxODE objects
solve.RxODE | Solve RxODE objects
solve.solveRxDll | Solve RxODE objects
spread_ | spread_ for 'solveRxDll' object
spread_.solveRxDll | spread_ for 'solveRxDll' object
summarise_ | summarise_ for 'solveRxDll' object
summarise_.solveRxDll | summarise_ for 'solveRxDll' object
summary.RxCompilationManager | Print expanded information about the RxODE object.
summary.RxODE | Print expanded information about the RxODE object.

## -- T --

transmute_ | transmute_ for 'solveRxDll' object
transmute_.solveRxDll | transmute_ for 'solveRxDll' object

## -- U --

unite_ | unite_ for 'solveRxDll' object
unite_.solveRxDll | unite_ for 'solveRxDll' object
update.solveRxODE | Update the solved object with any of the new parameters.

## -- W --

write.template.server | Generate an example (template) of a dosing regimen shiny app
write.template.ui | Generate an example (template) of a dosing regimen shiny app

## -- misc --

+.solveRxDll | rxChain Chain or add item to solved system of equations