BootOneRefFreeEwasModel
                        One Bootstrap sample for Reference-Free EWAS
                        Model
BootRefFreeEwasModel    Bootstrap for Reference-Free EWAS Model
EstDimIC                Dimension estimation by AIC and BIC
PairsBootOneRefFreeEwasModel
                        One Bootstrap Sample for Reference-Free EWAS
                        Model, Accounting for Paired Data
PairsBootRefFreeEwasModel
                        Bootstrap for Reference-Free EWAS Model,
                        Accounting for Paired Data
RefFreeCellMix          Reference-Free Cell Mixture Projection
RefFreeCellMixArray     Initialize Reference-Free Cell Mixture
                        Projection
RefFreeCellMixArrayDevianceBoot
                        RefFreeCellMixArrayDevianceBoot
RefFreeCellMixArrayDevianceBoots
                        RefFreeCellMixArrayDevianceBoots
RefFreeCellMixInitialize
                        Initialize Reference-Free Cell Mixture
                        Projection
RefFreeEwasModel        Reference-Free EWAS Model
X.HNSCC.caseStatusAge   HNSCC Example - Covariates
Y.HNSCC.averageBetas    HNSCC Example - DNA Methylation Average Betas
bootstrapPairs          One Bootstrap Sample for Pairs
deviance.RefFreeCellMix
                        deviance.RefFreeCellMix
omnibusBoot             Bootstrap-based omnibus test of significance
                        across all features
print.BootRefFreeEwasModel
                        print.BootRefFreeEwasModel
print.RefFreeCellMix    print.RefFreeCellMix
print.RefFreeEwasModel
                        print.RefFreeEwasModel
print.summaryBootRefFreeEwasModel
                        print.summaryBootRefFreeEwasModel
projectMix              Cell Mixture Projection (reference-based)
rfEwasExampleBetaValues
                        Simulated mixed-cell DNA methylation data set
rfEwasExampleCovariate
                        Simulated covariate for mixed-cell DNA
                        methylation data set
rfEwasExampleTRUEAlpha
                        True alpha intercepts used in simulation
rfEwasExampleTRUEBeta   True beta coefficients used in simulation (for
                        comparison purposes)
rfEwasExampleTRUEMethDMR
                        True M matrix (cell-specific methylation
                        values) used in simulation (for comparison
                        purposes)
rfEwasExampleTRUEOmega
                        True Omega (cell mixture) coefficients used in
                        simulation (for comparison purposes)
summary.BootRefFreeEwasModel
                        summary.BootRefFreeEwasModel
summary.RefFreeCellMix
                        summary.RefFreeCellMix
svdSafe                 Safe SVD-like matrix decomposition
