# Post Processing of (Half-)Hourly Eddy-Covariance Measurements

## Documentation for package ‘REddyProc’ version 1.1.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

B D E F G L N P R S U misc

REddyProc-package | Post Processing of (Half-)Hourly Eddy-Covariance Measurements

## -- B --

BerkeleyJulianDateToPOSIXct | BerkeleyJulianDateToPOSIXct

## -- D --

DEGebExample | Eddy covariance data from Gebesee crop site, Germany

## -- E --

Example_DETha98 | Eddy covariance data from Tharandt, Germany

## -- F --

fAddNCFVar | fAddNCFVar
fCalcAVPfromVMFandPress | fCalcAVPfromVMFandPress
fCalcETfromLE | fCalcETfromLE
fCalcExtRadiation | fCalcExtRadiation
fCalcPotRadiation | fCalcPotRadiation
fCalcRHfromAVPandTair | fCalcRHfromAVPandTair
fCalcSunPosition | fCalcSunPosition
fCalcSVPfromTair | fCalcSVPfromTair
fCalcVPDfromRHandTair | fCalcVPDfromRHandTair
fCheckHHTimeSeries | fCheckHHTimeSeries
fConvertCtoK | fConvertCtoK
fConvertGlobalToVisible | fConvertGlobalToVisible
fConvertKtoC | fConvertKtoC
fConvertTimeToPosix | fConvertTimeToPosix
fConvertVisibleWm2toPhotons | fConvertVisibleWm2toPhotons
fLloydTaylor | Temperature dependence of soil respiration
fLoadEuroFlux16 | fLoadEuroFlux16
fLoadFluxNCInfo | Get site information from BGI NetCDF files
fLoadFluxNCIntoDataframe | Load NetCDF file
fLoadTXTIntoDataframe | Load text file with one header and one unit row into data frame
fReadTimeBerkeley | fReadTimeBerkeley
fReadTimeSeveralCols | fReadTimeSeveralCols
fWriteDataframeToFile | fWriteDataframeToFile

## -- G --

getAmerifluxToBGC05VariableNameMapping | getAmerifluxToBGC05VariableNameMapping
getBGC05ToAmerifluxVariableNameMapping | getBGC05ToAmerifluxVariableNameMapping
getExamplePath | getExamplePath
getFilledExampleDETha98Data | getFilledExampleDETha98Data
getREddyProcExampleDir | getREddyProcExampleDir
getTZone | getTZone

## -- L --

LightResponseCurveFitter | LightResponseCurveFitter
LightResponseCurveFitter-class | Class '"LightResponseCurveFitter"'
LightResponseCurveFitter_computeCost | LightResponseCurveFitter computeCost
LightResponseCurveFitter_computeLRCGradient | LightResponseCurveFitter computeLRCGradient
LightResponseCurveFitter_fitLRC | LightResponseCurveFitter fitLRC
LightResponseCurveFitter_getOptimizedParameterPositions | LightResponseCurveFitter getOptimizedParameterPositions
LightResponseCurveFitter_getParameterInitials | LightResponseCurveFitter getParameterInitials
LightResponseCurveFitter_getParameterNames | LightResponseCurveFitter getParameterNames
LightResponseCurveFitter_getPriorLocation | LightResponseCurveFitter getPriorLocation
LightResponseCurveFitter_getPriorScale | LightResponseCurveFitter getPriorScale
LightResponseCurveFitter_isParameterInBounds | LightResponseCurveFitter isParameterInBounds
LightResponseCurveFitter_optimLRC | LightResponseCurveFitter optimLRC
LightResponseCurveFitter_optimLRCBounds | LightResponseCurveFitter optimLRCBounds
LightResponseCurveFitter_optimLRCOnAdjustedPrior | LightResponseCurveFitter optimLRCOnAdjustedPrior
LightResponseCurveFitter_predictGPP | LightResponseCurveFitter predictGPP
LightResponseCurveFitter_predictLRC | LightResponseCurveFitter predictLRC
LogisticSigmoidLRCFitter | LogisticSigmoidLRCFitter
LogisticSigmoidLRCFitter-class | Class '"LogisticSigmoidLRCFitter"'
LogisticSigmoidLRCFitter_predictGPP | LogisticSigmoidLRCFitter predictGPP

## -- N --

NonrectangularLRCFitter | NonrectangularLRCFitter
NonrectangularLRCFitter-class | Class '"NonrectangularLRCFitter"'
NonrectangularLRCFitter_getParameterNames | NonrectangularLRCFitter getParameterNames
NonrectangularLRCFitter_predictGPP | NonrectangularLRCFitter predictGPP

## -- P --

partGLControl | partGLControl
partGLControlLasslopCompatible | partGLControlLasslopCompatible
partGLExtractStandardData | partGLExtractStandardData
partitionNEEGL | partitionNEEGL
POSIXctToBerkeleyJulianDate | POSIXctToBerkeleyJulianDate

## -- R --

RectangularLRCFitter | RectangularLRCFitter
RectangularLRCFitter-class | Class '"RectangularLRCFitter"'
RectangularLRCFitterCVersion | RectangularLRCFitterCVersion
RectangularLRCFitterCVersion-class | Class '"RectangularLRCFitterCVersion"'
RectangularLRCFitter_predictGPP | RectangularLRCFitter predictGPP
REddyProc | Post Processing of (Half-)Hourly Eddy-Covariance Measurements
renameVariablesInDataframe | renameVariablesInDataframe
RHLightResponseCostC | RHLightResponseCostC

## -- S --

sDATA | globalDummyVars
sEddyProc | sEddyProc
sEddyProc-class | Class '"sEddyProc"'
sEddyProc_initialize | sEddyProc_initialize - Initialization of sEddyProc
sEddyProc_sCalcPotRadiation | sEddyProc sCalcPotRadiation
sEddyProc_sEstUstarThreshold | sEddyProc$sEstUstarThreshold - Estimating ustar threshold
sEddyProc_sEstUstarThresholdDistribution | sEddyProc sEstUstarThresholdDistribution
sEddyProc_sExportData | sEddyProc$sExportData - Export internal sDATA data frame
sEddyProc_sExportResults | sEddyProc$sExportData - Export internal sTEMP data frame with result columns
sEddyProc_sFillInit | sEddyProc$sFillInit - Initialize gap filling
sEddyProc_sFillLUT | sEddyProc$sFillLUT - Gap filling with Look-Up Table (LUT)
sEddyProc_sFillMDC | sEddyProc$sFillMDC - Gap filling with Mean Diurnal Course (MDC)
sEddyProc_sGetData | sEddyProc$sGetData - Get internal sDATA data frame
sEddyProc_sGLFluxPartition | sGLFluxPartition: Flux partitioning after Lasslop et al. (2010)
sEddyProc_sMDSGapFill | sEddyProc$sMDSGapFill - MDS gap filling algorithm
sEddyProc_sMDSGapFillAfterUstar | sEddyProc$sMDSGapFillAfterUstar - MDS gap filling algorithm after u * filtering
sEddyProc_sMDSGapFillAfterUStarDistr | GapFilling for several filters of estimated friction velocity Ustar thresholds.
sEddyProc_sMRFluxPartition | sEddyProc$sMRFluxPartition - Flux partitioning after Reichstein et al. (2005)
sEddyProc_sPlotDailySums | sEddyProc$sPlotDailySums - Image with daily sums of each year
sEddyProc_sPlotDailySumsY | sEddyProc$sPlotDailySumsY - Plot daily sum of specified year
sEddyProc_sPlotDiurnalCycle | sEddyProc$sPlotDiurnalCycle - Image with diurnal cycles of each month
sEddyProc_sPlotFingerprint | sEddyProc$sPlotFingerprint - Image with fingerprints of each year
sEddyProc_sPlotFingerprintY | sEddyProc$sPlotFingerprintY - Plot fingerprint of specified year
sEddyProc_sPlotHHFluxes | sEddyProc sPlotHHFluxes
sEddyProc_sPlotHHFluxesY | sEddyProc$sPlotHHFluxesY - Plot half-hourly fluxes of specified year
sEddyProc_sPlotNEEVersusUStarForSeason | sEddyProc$sPlotNEEVersusUStarForSeason - Image with NEE versus UStar for each Temperature class of given season
sEddyProc_sSetLocationInfo | sEddyProc sSetLocationInfo
sID | globalDummyVars
sINFO | globalDummyVars
sLOCATION | globalDummyVars
sPlotFingerprint | sEddyProc$sPlotFingerprint - Image with fingerprints of each year
sTEMP | globalDummyVars
sUSTAR | globalDummyVars

## -- U --

usControlUstarEst | usControlUstarEst
usControlUstarSubsetting | usControlUstarSubsetting
usCreateSeasonFactorMonth | usCreateSeasonFactorMonth
usCreateSeasonFactorMonthWithinYear | usCreateSeasonFactorMonthWithinYear
usCreateSeasonFactorYday | usCreateSeasonFactorYday
usCreateSeasonFactorYdayYear | usCreateSeasonFactorYdayYear
usEstUstarThreshold | usEstUstarThreshold - Estimating ustar threshold
usEstUstarThresholdSingleFw1Binned | usEstUstarThresholdSingleFw1Binned
usEstUstarThresholdSingleFw2Binned | usEstUstarThresholdSingleFw2Binned
usGetAnnualSeasonUStarMap | usGetAnnualSeasonUStarMap
usGetSeasonalSeasonUStarMap | usGetSeasonalSeasonUStarMap
usGetYearOfSeason | usGetYearOfSeason

## -- misc --

_REddyProc_RHLightResponseCostC | RHLightResponseCostC