PsiHat-package	PsiHat-package
alt-class	PsiHat-internal
are	PsiHat-internal
are_null	PsiHat-internal
are_prob	PsiHat-internal
are_unk	PsiHat-internal
as.numeric,est.lfdr.x-method	PsiHat-internal
as.numeric-methods	PsiHat-internal
assert.are	PsiHat-internal
assert.is	PsiHat-internal
assumedNull	PsiHat-internal
as_colmatrix	PsiHat-internal
as_rowmatrix	PsiHat-internal
b.notrobust	PsiHat-internal
b.robust	PsiHat-internal
BFDR	PsiHat-internal
bias.corrected.pvalue-class	PsiHat-internal
binom_BFDR	PsiHat-internal
binom_limit	PsiHat-internal
binom_prob	PsiHat-internal
binom_rBFDR	PsiHat-internal
binom_rprob	PsiHat-internal
blank.plot	PsiHat-internal
blank_CDF	PsiHat-internal
CDF-class	PsiHat-internal
coerce,bias.corrected.pvalue,numeric-method	PsiHat-internal
coerce,cvalue,numeric-method	PsiHat-internal
coerce,nExpressionSet,numeric-method	PsiHat-internal
coerce,nExpressionSet,nXprnSet-method	PsiHat-internal
coerce,nExpressionSet,nxprnSet-method	PsiHat-internal
coerce,Numeric,numeric-method	PsiHat-internal
coerce,nxprnSet,nExpressionSet-method	PsiHat-internal
coerce,nxprnSet,numeric-method	PsiHat-internal
coerce,nxprnSetPair,nxprnSet-method	PsiHat-internal
coerce,ttest,cvalue-method	PsiHat-internal
coerce-methods	PsiHat-internal
coerce<-,bias.corrected.pvalue,numeric-method	PsiHat-internal
coerce<-,Numeric,numeric-method	PsiHat-internal
coerce<--methods	PsiHat-internal
coercenExpressionSet	PsiHat-internal
colnames,ANY-method	PsiHat-internal
colnames,nd1class-method	PsiHat-internal
colnames-methods	PsiHat-internal
colnames<-,ANY,ANY-method	PsiHat-internal
colnames<-,nd1class,nd1class-method	PsiHat-internal
colnames<--methods	PsiHat-internal
Combine	PsiHat-internal
Combine,Numeric,Numeric-method	PsiHat-internal
Combine,ttest,ttest-method	PsiHat-internal
Combine,Vector,Vector-method	PsiHat-internal
Combine-methods	PsiHat-internal
CombinedNames	PsiHat-internal
compatible	PsiHat-internal
confidence_CDF	PsiHat-internal
CorrectLimits	PsiHat-internal
CorrectLimits,numeric-method	PsiHat-internal
CorrectLimits-methods	PsiHat-internal
cvalue-class	PsiHat-internal
default	PsiHat-internal
dim,nxprnSet-method	PsiHat-internal
dim,nxprnSetPair-method	PsiHat-internal
dim-methods	PsiHat-internal
dimnames,nxprnSet-method	PsiHat-internal
dimnames,nxprnSetPair-method	PsiHat-internal
dimnames-methods	PsiHat-internal
empiricalNull-class	PsiHat-internal
est.lfdr.pvalue-class	PsiHat-internal
est.lfdr.stat-class	PsiHat-internal
est.lfdr.x-class	PsiHat-internal
est2list	PsiHat-internal
estimated.BFDR	PsiHat-internal
estimated.LFDR	PsiHat-internal
exp,nExpressionSet-method	PsiHat-internal
exp,nxprnSet-method	PsiHat-internal
exp,nxprnSetPair-method	PsiHat-internal
exp-methods	PsiHat-internal
expected.lfdr	PsiHat-internal
get_other.from.testfun	PsiHat-internal
get_pvalues	PsiHat-internal
get_stats	PsiHat-internal
grepl_or	PsiHat-internal
grep_or	PsiHat-internal
hsm	PsiHat-internal
indSortAsY	PsiHat-internal
internals	PsiHat-internal
isInteger	PsiHat-internal
is_any	PsiHat-internal
is_err	PsiHat-internal
is_error	PsiHat-internal
is_nd1class	PsiHat-internal
is_nd2class	PsiHat-internal
is_paired	PsiHat-internal
is_paired,nd1class,nd1class-method	PsiHat-internal
is_paired,nd1class,nd2class-method	PsiHat-internal
is_paired,nd2class,nd1class-method	PsiHat-internal
is_paired,nd2class,nd2class-method	PsiHat-internal
is_paired-methods	PsiHat-internal
is_positive	PsiHat-internal
is_positive,nd1class-method	PsiHat-internal
is_positive,nd2class-method	PsiHat-internal
is_positive-methods	PsiHat-internal
is_prob	PsiHat-internal
is_prob,est.lfdr.pvalue-method	PsiHat-internal
is_prob,est.lfdr.stat-method	PsiHat-internal
is_prob,numeric-method	PsiHat-internal
is_prob-methods	PsiHat-internal
is_unique	PsiHat-internal
is_unk	PsiHat-internal
is_vide	PsiHat-internal
length,cvalue-method	PsiHat-internal
length,est.lfdr.x-method	PsiHat-internal
length,nExpressionSet-method	PsiHat-internal
length,nxprnSet-method	PsiHat-internal
length,nxprnSetPair-method	PsiHat-internal
length,ttest-method	PsiHat-internal
length-methods	PsiHat-internal
lfdr	PsiHat-internal
lfdr.assumedNull	lfdr.empiricalNull
lfdr.bbe	lfdr.bbe
lfdr.bbe1	lfdr.bbe
lfdr.elfdr	lfdr.elfdr
lfdr.empiricalNull	lfdr.empiricalNull
lfdr.hbe	PsiHat-internal
lfdr.hbea	PsiHat-internal
lfdr.hbee	PsiHat-internal
list2est	PsiHat-internal
list2matrix	PsiHat-internal
loccov	PsiHat-internal
loccov2	PsiHat-internal
locfdr	PsiHat-internal
locfdr.rname	PsiHat-internal
locmle	PsiHat-internal
logb,ANY,ANY-method	PsiHat-internal
logb,nExpressionSet,missing-method	PsiHat-internal
logb,nXprnSet,missing-method	PsiHat-internal
logb,nxprnSet,missing-method	PsiHat-internal
logb,nxprnSetPair,missing-method	PsiHat-internal
logb-methods	PsiHat-internal
log_lfdr_se	PsiHat-internal
MakeNames	PsiHat-internal
make_labels	PsiHat-internal
Matrix-class	PsiHat-internal
matrix2list	PsiHat-internal
Mean	PsiHat-internal
Mean,matrix-method	PsiHat-internal
Mean,numeric-method	PsiHat-internal
Mean-methods	PsiHat-internal
Median	PsiHat-internal
Median,matrix-method	PsiHat-internal
Median,numeric-method	PsiHat-internal
Median-methods	PsiHat-internal
Mfrow	PsiHat-internal
monotonic.pvalue	PsiHat-internal
nalt	PsiHat-internal
names,cvalue-method	PsiHat-internal
names,est.lfdr.x-method	PsiHat-internal
names,nExpressionSet-method	PsiHat-internal
names,nxprnSet-method	PsiHat-internal
names,nxprnSetPair-method	PsiHat-internal
names,ttest-method	PsiHat-internal
names-methods	PsiHat-internal
names<-,est.lfdr.x,character-method	PsiHat-internal
names<--methods	PsiHat-internal
nannotation	PsiHat-internal
nannotation,nExpressionSet-method	PsiHat-internal
nannotation,nxprnSet-method	PsiHat-internal
nannotation,nxprnSetPair-method	PsiHat-internal
nannotation-methods	PsiHat-internal
ncbind	PsiHat-internal
nCDF	PsiHat-internal
ncol,ANY-method	PsiHat-internal
ncol,nd1class-method	PsiHat-internal
ncol,NULL-method	PsiHat-internal
ncol-methods	PsiHat-internal
ncvalue	PsiHat-internal
nd1class-class	PsiHat-internal
nd2class-class	PsiHat-internal
nempiricalNull	PsiHat-internal
new_alt	PsiHat-internal
new_bias.corrected.pvalue	PsiHat-internal
new_CDF	PsiHat-internal
new_cvalue	PsiHat-internal
new_empiricalNull	PsiHat-internal
new_est.lfdr.pvalue	PsiHat-internal
new_est.lfdr.stat	PsiHat-internal
new_nExpressionSet	PsiHat-internal
new_nXprnSet	PsiHat-internal
new_nxprnSet	PsiHat-internal
new_nxprnSetPair	PsiHat-internal
new_nxprnSetPair,matrix,matrix,missing-method	PsiHat-internal
new_nxprnSetPair,nxprnSet,missing,character-method	PsiHat-internal
new_nxprnSetPair,nXprnSet,nXprnSet,missing-method	PsiHat-internal
new_nxprnSetPair,nxprnSet,nxprnSet,missing-method	PsiHat-internal
new_nxprnSetPair-methods	PsiHat-internal
new_ttest	PsiHat-internal
nExpressionSet-class	PsiHat-internal
nexprs	PsiHat-internal
nexprs,nExpressionSet-method	PsiHat-internal
nexprs,nXprnSet-method	PsiHat-internal
nexprs,nxprnSet-method	PsiHat-internal
nexprs,nxprnSetPair-method	PsiHat-internal
nexprs-methods	PsiHat-internal
nexprs<-	PsiHat-internal
nexprs<-,nExpressionSet,matrix-method	PsiHat-internal
nexprs<-,nExpressionSet,numeric-method	PsiHat-internal
nexprs<-,nxprnSet,matrix-method	PsiHat-internal
nexprs<-,nxprnSet,numeric-method	PsiHat-internal
nexprs<--methods	PsiHat-internal
nfData	PsiHat-internal
nfData,nExpressionSet-method	PsiHat-internal
nfData,nxprnSet-method	PsiHat-internal
nfData,nxprnSetPair-method	PsiHat-internal
nfData-methods	PsiHat-internal
nfeatureNames	PsiHat-internal
nfeatureNames,nExpressionSet-method	PsiHat-internal
nfeatureNames,nxprnSet-method	PsiHat-internal
nfeatureNames,nxprnSetObjectPair-method	PsiHat-internal
nfeatureNames,nxprnSetPair-method	PsiHat-internal
nfeatureNames-methods	PsiHat-internal
nMatrix	PsiHat-internal
nMatrix,matrix-method	PsiHat-internal
nMatrix,numeric-method	PsiHat-internal
nMatrix-methods	PsiHat-internal
nNumeric	PsiHat-internal
nNumeric,numeric-method	PsiHat-internal
nNumeric-methods	PsiHat-internal
npData	PsiHat-internal
npData,nExpressionSet-method	PsiHat-internal
npData,nxprnSet-method	PsiHat-internal
npData,nxprnSetPair-method	PsiHat-internal
npData-methods	PsiHat-internal
nprnSet2matrix	PsiHat-internal
nqvalue	rvalue
nrbind	PsiHat-internal
nrow,ANY-method	PsiHat-internal
nrow,nd1class-method	PsiHat-internal
nrow,NULL-method	PsiHat-internal
nrow-methods	PsiHat-internal
nScalar	PsiHat-internal
nscalar	PsiHat-internal
nScalar,ANY-method	PsiHat-internal
nscalar,ANY-method	PsiHat-internal
nscalar,numeric-method	PsiHat-internal
nscalar,scalar-method	PsiHat-internal
nScalar-methods	PsiHat-internal
nscalar-methods	PsiHat-internal
nsize	PsiHat-internal
nttest	PsiHat-internal
Numeric-class	PsiHat-internal
nunique	PsiHat-internal
nx11	PsiHat-internal
nXprnSet-class	PsiHat-internal
nxprnSet-class	PsiHat-internal
nxprnSetObject-class	PsiHat-internal
nxprnSetObjectPair-class	PsiHat-internal
nxprnSetObjects-class	PsiHat-internal
nxprnSetPair-class	PsiHat-internal
nxprnSubset	PsiHat-internal
nxprnSubset,nExpressionSet-method	PsiHat-internal
nxprnSubset,nxprnSet-method	PsiHat-internal
nxprnSubset-methods	PsiHat-internal
p0est	p0est
Pbinom	PsiHat-internal
PHATs.pvalue	PsiHat-internal
PHATs.stat	PsiHat-internal
prep.2matrices	PsiHat-internal
print,ANY-method	PsiHat-internal
print,nExpressionSet-method	PsiHat-internal
print,nXprnSet-method	PsiHat-internal
print,nxprnSet-method	PsiHat-internal
print,nxprnSetPair-method	PsiHat-internal
print-methods	PsiHat-internal
printGeneric	PsiHat-internal
printInvalid	PsiHat-internal
print_stats	PsiHat-internal
probability_CDF	PsiHat-internal
PsiHat	PsiHat-package
pval2stat	PsiHat-internal
PValue	PsiHat-internal
PValueFUN	PsiHat-internal
Rank	PsiHat-internal
Rank,numeric-method	PsiHat-internal
Rank-methods	PsiHat-internal
removeEQ.from.matrix	PsiHat-internal
removeMissing	PsiHat-internal
removeMissing,nxprnSet-method	PsiHat-internal
removeMissing,nxprnSetPair-method	PsiHat-internal
removeMissing-methods	PsiHat-internal
removeNA.from.matrix	PsiHat-internal
removeRC.from.matrix	PsiHat-internal
Rep	PsiHat-internal
Rep,matrix-method	PsiHat-internal
Rep,nxprnSet-method	PsiHat-internal
Rep,Vector-method	PsiHat-internal
Rep-methods	PsiHat-internal
RepNames	PsiHat-internal
rownames,ANY-method	PsiHat-internal
rownames,nd1class-method	PsiHat-internal
rownames-methods	PsiHat-internal
rvalue	rvalue
s3	PsiHat-internal
s3,ANY,character-method	PsiHat-internal
s3,ANY,missing-method	PsiHat-internal
s3-methods	PsiHat-internal
s3_recursive	PsiHat-internal
sameAsX_names	PsiHat-internal
sameAsY	PsiHat-internal
sameLengths	PsiHat-internal
sameNames	PsiHat-internal
sameNames,ANY-method	PsiHat-internal
sameNames-methods	PsiHat-internal
sameXY_names	PsiHat-internal
sample_size	PsiHat-internal
sample_size,matrix-method	PsiHat-internal
sample_size,numeric-method	PsiHat-internal
sample_size,nxprnSet-method	PsiHat-internal
sample_size-methods	PsiHat-internal
Scalar-class	PsiHat-internal
scalar-class	PsiHat-internal
Sd	PsiHat-internal
Sd,numeric-method	PsiHat-internal
Sd-methods	PsiHat-internal
se.mean	PsiHat-internal
Seq	PsiHat-internal
SFDR	PsiHat-internal
silence	PsiHat-internal
Slot	PsiHat-internal
sorted	PsiHat-internal
spline.des	PsiHat-internal
stat2pval	PsiHat-internal
stats	PsiHat-internal
string2char	PsiHat-internal
ttest-class	PsiHat-internal
t_test_CDF	PsiHat-internal
undefAsNA	PsiHat-internal
Var	PsiHat-internal
vect2string	PsiHat-internal
Vector-class	PsiHat-internal
wilkinson.test	PsiHat-internal
[,bias.corrected.pvalue,ANY,missing-method	PsiHat-internal
[,cvalue,ANY,missing-method	PsiHat-internal
[,est.lfdr.x,ANY,missing-method	PsiHat-internal
[,Matrix,ANY,ANY-method	PsiHat-internal
[,Matrix,ANY,missing-method	PsiHat-internal
[,Matrix,missing,ANY-method	PsiHat-internal
[,nExpressionSet,ANY,ANY-method	PsiHat-internal
[,nExpressionSet,ANY,missing-method	PsiHat-internal
[,nExpressionSet,missing,ANY-method	PsiHat-internal
[,Numeric,ANY,missing-method	PsiHat-internal
[,nxprnSet,ANY,ANY-method	PsiHat-internal
[,nxprnSet,ANY,missing-method	PsiHat-internal
[,nxprnSet,missing,ANY-method	PsiHat-internal
[,nxprnSetPair,ANY,missing-method	PsiHat-internal
[,ttest,ANY,missing-method	PsiHat-internal
[-methods	PsiHat-internal
[<-,Matrix,ANY,missing-method	PsiHat-internal
[<-,Numeric,ANY,missing-method	PsiHat-internal
[<--methods	PsiHat-internal
