# Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines

## Documentation for package ‘MM2S’ version 1.0.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

Frozen_ES_Rank_Matrix | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
genesetHuman | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatGroup3 | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatGroup4 | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatNormal | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatSHH | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GenesetStatWNT | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
GTML_Mouse_Preds | Table of Pre-computed MM2S Predictions for 32 replicates of the GTML mouse model
HumanGMT | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
Human_Cho_Expr | Gene Expression data from selected samples of the Human CHO Medulloblastoma dataset
MB_SampleInfo | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
MM2S.human | MM2S Prediction of Human Medulloblastoma Samples
MM2S.mouse | MM2S Prediction of Mouse Medulloblastoma Samples
MM2Ssetup | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
MouseGMT | MM2S ssGSEA Training Matrix, MB Sample Group information for the training matrix, GMT files for Human and Mouse, and list of geneset names
PCARender | PCA Projections of ssGSEA Rank Matrix for Test Samples Onto the MM2S Training Set
PredictionsBarplot | Stacked Barplot of MM2S Subtype Predictions for Given Samples
PredictionsDistributionBoxplot | Boxplot of MM2S Subtype Predictions for Given Samples
PredictionsDistributionPie | Heatmap of MM2S Subtype Predictions for Given Samples
PredictionsHeatmap | Heatmap of MM2S Subtype Predictions for Given Samples
WNT_Mouse_Expr | Gene Expression data pertaining to the GMTL mouse mode