##exportPattern("^[[:alpha:]]+")
##Package used in HBP
import("grid")
import("lattice")
import("OmicCircos")
import("ggplot2")
import("igraph")
import("reshape2")
import("pgirmess")
import("coin")
import("multcomp")
##import("flexclust")
import("HiTC")
import("gplots")
##import("stringr")
importFrom("flexclust","bootFlexclust","cclust")
importFrom("BiocInstaller","biocLite")
importFrom("rtracklayer","export")
importFrom("grDevices", "dev.off", "heat.colors", "jpeg", "pdf","rainbow")
importFrom("graphics", "lines", "mtext", "par", "text","plot","boxplot")
importFrom("stats", "cutree", "dist", "hclust", "kruskal.test", "model.matrix", "na.omit", "rect.hclust", "t.test")
importFrom("utils", "read.csv", "read.table", "write.csv","write.table")
##Export functions and generics
export("generate_enzyme_file","run_hicpro","generate_matrix","if_distribution_analysis","network_analysis","circos_plot","statistical_analysis")
