# Hi-C BED File Analysis Pipeline

## Documentation for package ‘HBP’ version 0.1.2

- DESCRIPTION file.

## Help Pages

calculate_omiccircos_data | output the interaction that our bed interact with ourbed.
calculate_omiccircos_data_solo | help calculate_omiccircos_data to finish its work
check_bed_bin | process the bed file data to bin
choose_chr_bed | choose which chrom from the BED file
circos_plot | Visualization of interactions and tracks
convert_bed_to_matrix | convert the bed file to matrix file for the next analysis
find_bed_to_bed_interaction | find the interaction between specific sites
find_bed_to_bed_interaction_solo | help find_bed_to_bed_interaction finish its work
generate_enzyme_file | generate enzyme file
generate_matrix | generate matrix files
if_distribution_analysis | analyse the interaction frequency distribution
load_all_wig | the function to load wig file
load_bed | the function to load bed file
load_bed_wig | the function to load wig file in the specific sites
load_wig | the function to load tracks
network_analysis | Interaction network topological analysis
run_hicpro | run the hic-pro
statistical_analysis | Statistical significance tests
whitered | generate the color of heatmap