ArtCohort               Class '"ArtCohort"'
PosteriorProbabilities
                        Class '"PosteriorProbabilities"'
addStateMatrix          addStateMatrix
countCost               Counts a cost of the interventions in the
                        cohort
cumulativeIncidence     Cumulative Incidence
generateHazardMatrix    generate template for transition functions
generateParameterCovarianceMatrix
                        generate a template for parameter covariances
generateParameterMatrix
                        generate a template for mean parameters
graphHf                 graphHf
makeM                   makeM
mergeStates             mergeStates
plot,PosteriorProbabilities-method
                        plot
plotProgressionPath     plotProgressionPath
simulateCohort          Simulate cohort
start_gui               Starts graphical user interface for gems
timeInStates            Builds hazard function matrix based on the
                        hazard function names matrix.
transition.structure    Class '"transition.structure"'
transitionProbabilities
                        transition probabilities
