Genomic Latent Dirichlet Allocation

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Documentation for package ‘FUNLDA’ version 1.1

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FUNLDA-package FUNLDA - a latent Dirichlet allocation package for genomic annotations
FitLDAModel fit an LDA model
FitLDAModelNewTissues Update the tissues in a fitted LDA model
FUNLDA FUNLDA - a latent Dirichlet allocation package for genomic annotations
Predict Predict posterior probabilities for variants to be in each cluster in a fitted LDA model
tissuenew Data for a tissue not used to to fit the LDA model
training Toy training data