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| EcoGenetics-package | Management and Exploratory Analysis of Spatial Data in Landscape Genetics |
| aue.aggregated_df | Generate aggregated dataframe |
| aue.check_class | Obtain the classes for each column of a data frame |
| aue.dataAngle | Angles for an XY coordinates matrix |
| aue.df2image | Transforming a data frame into a raster |
| aue.image2df | Transforming a raster into a data frame with cartesian coordinates |
| aue.phenosimil | Phenotypic similarity for vector, matrix or data frame acoording to Ritland (1996) |
| aue.rescale | Scaling a data frame or matrix to [0, 1] or [-1, 1] ranges |
| aue.sort | Ordering the content of cells in a matrix. Ordering alleles in a genetic matrix. |
| aue.split_categorical | Split categorical variable into levels, using a second factor (hierarchy) to aggregate the data |
| coordinates | Coordinates |
| eco | Eco |
| eco.alfreq | Allelic frequency histograms for an ecogen genetic data frame |
| eco.association | Chi-square and Fisher's exact test for association of loci and alleles with a factor |
| eco.bearing | Angular Spatial Weights |
| eco.cbind | Combining ecogen objects by column |
| eco.clear | Clearing the working environment, maintaining only the specified objects |
| eco.convert | Conversion utility for genetic data |
| eco.cormantel | Mantel and partial Mantel correlograms, omnidirectional and directional |
| eco.correlog | Moran's I, Geary's C and bivariate Moran's I correlograms, omnidirectional and directional |
| eco.detrend | Detrending spatial data with polynomial interpolation |
| eco.forestplot | Forestplot graphs |
| eco.forestplot-method | Forestplot graphs |
| eco.format | Format tool for genetic data |
| eco.formula | Formula construction for ecogen objects |
| eco.gsa | Global spatial analysis |
| eco.kin.loiselle | Obtention of the multilocus Loiselle's Fij matrix |
| eco.lagweight | Obtention of a list of spatial weights for classes defined by inter-individual distances or nearest-neighbors |
| eco.listw2ew | Conversion from listw to ecoweight |
| eco.lmtree | Fitting Multiple Linear Regression models by stepwise AIC selection and Multiple Classification and Regression Trees via party |
| eco.lsa | Local spatial analysis |
| eco.malecot | Global and local kinship analysis |
| eco.mantel | Mantel and partial Mantel tests, with truncation option |
| eco.merge | Merging two ecogen objects. Ordering the rows of an ecogen object according to the rows of another |
| eco.NDVI | Generation of atmospherically corrected NDVI and MSAVI2 images for temporal series of Landsat 5 and 7 |
| eco.NDVI.post | Postprocessing for NDVI and MSAVI2 temporal series of Landsat 5 and 7 |
| eco.order | Functions deprecated in EcoGenetics version 1.2.0-2 |
| eco.pairtest | Kruskall - Wallis + Wilcoxon (Mann-Whitney U) and aov + Tukey-HSD tests for an ecogen object |
| eco.plotCorrelog | eco.plotCorrelog |
| eco.plotCorrelogB | eco.plotCorrelogB |
| eco.plotGlobal | GSA plot methods |
| eco.plotLocal | eco.plotLocal |
| eco.plotWeight | Plot for a connection network |
| eco.post.geneland | Log posterior probability plot for Geneland repetitions with fixed K |
| eco.rankplot | Rankplot graphs |
| eco.rankplot-method | Rankplot graphs |
| eco.rasterplot | Rasterplot graphs |
| eco.rasterplot-method | rasterplot graph for eco.lsa results |
| eco.rbind | Combining ecogen objects by row |
| eco.remove | Creating an updated ecogen object by removing results of the slot OUT |
| eco.slide.con | Sliding a window along a connection network |
| eco.slide.matrix | Sliding window for matrix data |
| eco.split | Splitting an ecogen object by group |
| eco.subset | Subsetting an ecogen object by group |
| eco.theilsen | Theil-sen regression for a raster time series |
| eco.variogram | Empirical variogram |
| eco.weight | Spatial weights |
| eco2 | Eco2 |
| eco3 | Eco3 |
| ecogen | Creating a new ecogen object |
| ecogen2ecopop | Conversion form ecogen to ecopop |
| ecogen2geneland | Creating input data for Geneland with an ecogen object |
| ecogen2genepop | Exporting an ecogen genetic data frame into Genepop format |
| ecogen2genind | Conversion form ecogen to genind and genind to ecogen |
| ecogen2gstudio | Conversion from ecogen to gstudio and gstudio to ecogen |
| ecogen2hierfstat | Converting an ecogen genetic data frame into a hierfstat data frame |
| ecogen2spagedi | Exporting an ecogen genetic data frame into SPAGeDi format |
| EcoGenetics | Management and Exploratory Analysis of Spatial Data in Landscape Genetics |
| ecogenetics_devel | EcoGenetic devel site |
| ecogenetics_tutorial | EcoGenetic tutorial site |
| ecopop | Creating a new ecopop object |
| ecopop2genpop | Conversion form ecopop to genpop and genpop to ecopop |
| environment | environment |
| genepop2ecogen | Importing a Genepop file |
| genind2ecogen | Conversion form ecogen to genind and genind to ecogen |
| genotype | genotype |
| genpop2ecopop | Conversion form ecopop to genpop and genpop to ecopop |
| grf.multiplot | Multiple plot function for ggplot |
| grf.seqmultiplot | Plot a ggplot sequence in layers of n plots arranged in k rows |
| gstudio2ecogen | Conversion from ecogen to gstudio and gstudio to ecogen |
| my_ecopop | my_ecopop |
| phenotype | phenotype |
| plot-method | plot eco.multilsa |
| spagedi2ecogen | Importing a SPAGeDi file, via conversion to ecogen |
| structure | structure |
| summary-method | Summary for eco.lmtree output |
| tab | tab |
| table.sokal | table.sokal |