Package: DeLorean
Title: Estimates Pseudotimes for Single Cell Expression Data
Author: John Reid <john.reid@mrc-bsu.cam.ac.uk>
Maintainer: John Reid <john.reid@mrc-bsu.cam.ac.uk>
Version: 1.3.0
Description: Implements the DeLorean model (Reid & Wernisch (2016)
    <doi:10.1093/bioinformatics/btw372>) to estimate pseudotimes for
    single cell expression data. The DeLorean model uses a Gaussian process
    latent variable model to model uncertainty in the capture time of
    cross-sectional data.
Depends: R (>= 3.0.2), Rcpp (>= 0.12.0)
Imports: rstan (>= 2.15.1), dplyr (>= 0.4.3), reshape2 (>= 1.4),
        stringr (>= 0.6.2), ggplot2 (>= 1.0.0), MASS (>= 7.3), broom,
        coda, parallel, functional, kernlab, fastICA, seriation,
        memoise
Suggests: knitr (>= 1.8), knitcitations, rmarkdown, formatR, extrafont,
        testthat, svglite, VGAM
License: MIT + file LICENSE
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-01-03 13:32:50 UTC; john
Repository: CRAN
Date/Publication: 2018-01-03 15:13:32 UTC
Built: R 3.3.3; ; 2018-04-22 17:45:58 UTC; windows
