| CovTools-package | A Collection of Geometric and Statistical Tools for Covariance Analysis |
| CovDist | Compute pairwise distance for symmetric positive definite matrices. |
| CovEst.adaptive | Covariance Estimation via Adaptive Thresholding |
| CovEst.hard | Covariance Estimation via Hard Thresholding |
| CovEst.hardPD | Covariance Estimation via Hard Thresholding under Positive-Definiteness Constraint |
| CovEst.nearPD | Covariance Estimation via Nearest Positive-Definite Matrix Projection |
| CovEst.soft | Covariance Estimation via Soft Thresholding |
| CovMean | Estimate mean covariance matrix |
| CovTest1 | One-Sample Tests for Covariance Matrices |
| CovTest2 | Two-Sample Tests for Covariance Matrices |
| PreEst.banded1 | Bayesian Estimation of a Banded Precision Matrix (Banerjee 2014) |
| PreEst.banded2 | Bayesian Estimation of a Banded Precision Matrix (Lee 2017) |
| PreEst.banded3 | Banded Precision Matrix Estimation via Bandwidth Test |
| PreEst.glasso | Precision Matrix Estimation via Graphical Lasso |
| samplecovs | Generate Sample Covariances of 2 groups |