# Cluster Evaluation

## Documentation for package ‘ClueR’ version 1.2

- DESCRIPTION file.

## Help Pages

ClueR-package | CLUster Evaluation R package
CLUE | CLUster Evaluation R package
clustEnrichment | Cluster enrichment test
clustOptimal | Generate optimal clustering
enrichmentTest | Fisher's exact test-based enrichment test
fuzzPlot | Visualize fuzzy clustering results
hES | Human embryonic stem cell phosphoproteomics data
Pathways.biocarta | Biocarta pathway annotations
Pathways.DAVID | DAVID pathway annotations
Pathways.KEGG | KEGG pathway annotations
Pathways.reactome | Reactome pathway annotations
PhosphoELM.human | Phospho.ELM annotations for human
PhosphoELM.mouse | Phospho.ELM annotations for mouse
PhosphoSite.human | PhosphoSitePlus annotations for human
PhosphoSite.mouse | PhosphoSitePlus annotations for mouse
runClue | Run CLUster Evaluation
temporalSimu | Temporal data simulation