alignment	alignment
alignment2matrix	alignment2matrix
align_params	align_params
align_seq_mtx2grs	align_seq_mtx2grs
barplotshow	barplotshow
calculate_AA_variation	calculate_AA_variation
calculate_pseudo_counts	calculate_pseudo_counts
compare_cons_metrics	compare_cons_metrics
cons2seqs_ident	cons2seqs_ident
cons2seqs_sim	cons2seqs_sim
consensus	consensus
convert_AA_symbol	convert_AA_symbol
create_final_CSV	create_final_csv
create_structure_seq	create_structure_seq
CRE_conservativity	CRE_conservativity
delete_isoforms	delete_isoforms
D_matrix	D_matrix
Escore_conservativity	Escore_conservativity
excl_low_prob_strcts	excl_low_prob_strcts
find_consecutive_seq	find_consecutive_seq
find_seq	find_seq
find_seqid	find_seqid
get_prot_entropy	get_prot_entropy
get_remarks465_pdb	get_remarks465_pdb
get_seq_names	get_seq_names
get_structures_entropy	get_structures_entropy
get_structures_idx	get_structures_idx
gonnet	gonnet
is_upper	is_upper
kabat_conservativity	kabat_conservativity
kolmogorov_smirnov_test	kolmogorov_smirnov_test
landgraf_conservativity	landgraf_conservativity
noteworthy_seqs	noteworthy_seqs
pairwise_alignment_MSA	pairwise_alignment_MSA
plot_entropy	plot_entropy
plot_structure_on_protein	plot_structure_on_protein
prepare_structure_profile	prepare_structure_profile
preprocess_hmm_output	preprocess_hmm_output
read_structure	read_structure
RealValET_conservativity	RealValET_conservativity
schneider_conservativity	schneider_conservativity
shannon_conservativity	shannon_conservativity
small_alignment	small_alignment
structure	structure
substitution_mtx	substitution_mtx
