
# CHANGES IN AnaCoDa 0.1.1

## BUG FIXES
- fixed problem with getCSPEstimates where log scaling was falsely enabled

- fixed problem where the grouplist was not stored by writeParameterObject

## NEW FEATURES
- Added functions to calculate the Codon Adaptation Index, Effective Number of Codons and selection coefficients.

- Allow to set initial phi values based on observed phi values stored in genome object.


