| umx |
Helper Functions for Structural Equation Modelling in OpenMx |
| umx-deprecated |
Deprecated. May already stop() code and ask to be updated. May be dropped entirely in future. |
| umxACE |
umxACE: Build and run a Cholesky (uni- or multi-variate) |
| umxACEcov |
umxACEcov: Build and run a Cholesky with covariates in the covariance |
| umxACESexLim |
umxACESexLim: Build and run a sex-limitaiton twin model (not working yet) |
| umxAdd1 |
umxAdd1 |
| umxAPA |
umxAPA |
| umxCF_SexLim |
umxCF_SexLim |
| umxCI |
umxCI |
| umxCI_boot |
umxCI_boot |
| umxCompare |
umxCompare |
| umxCov2cor |
umxCov2cor |
| umxCovData |
umxCovData |
| umxCP |
umxCP: Build and run a Common pathway twin model |
| umxDiagnose |
mxDiagnostic |
| umxDrop1 |
umxDrop1: Unfinished function to mimic drop1 in OpenMx |
| umxEFA |
umxEFA |
| umxEquate |
umxEquate: Equate two or more paths |
| umxEval |
umxEval |
| umxExpCov |
Get the expected vcov matrix |
| umxExpMeans |
umxExpMean |
| umxFactanal |
umxEFA |
| umxFactor |
umxFactor |
| umxFitIndices |
umxFitIndices |
| umxFixAll |
umxFixAll: Fix all free parameters |
| umxGetParameters |
umxGetParameters: Get parameters from a model |
| umxGxE |
umxGxE: Implements ACE models with moderation of paths, e.g. by SES. |
| umxGxE_window |
umxGxE_window |
| umxHetCor |
umxHetCor |
| umxIP |
umxIP: Build and run an Independent pathway twin model |
| umxJiggle |
umxJiggle |
| umxLabel |
umxLabel: Add labels to a RAM model, matrix, or path |
| umxLatent |
umxLatent: Helper to ease making formative and reflective latent variables |
| umxMatrix |
umxMatrix: labeled mxMatrix, with name in the first place |
| umxMI |
umxMI |
| umxModify |
umxModify: Add, set, or drop model paths by label. |
| umxPadAndPruneForDefVars |
umxPadAndPruneForDefVars |
| umxPath |
umxPath: Easier (but powerful) specification of RAM paths. |
| umxPlot |
Create a graphical figure from an MxModel |
| umxPlotACE |
umxPlotACE |
| umxPlotACEcov |
umxPlotACEcov |
| umxPlotCP |
umxPlotCP |
| umxPlotGxE |
umxPlotGxE |
| umxPlotIP |
umxPlotIP |
| umxRAM |
umxRAM: Easy-to-use RAM model maker. |
| umxRAM2Ordinal |
umxRAM2Ordinal |
| umxReduce |
umxReduce |
| umxReRun |
umxModify: Add, set, or drop model paths by label. |
| umxRun |
umxRun: Run an mxModel |
| umxSetParameters |
umxSetParameters: Set parameters in an mxModel |
| umxSummary |
umxSummary.default |
| umxSummary.MxModel |
umxSummary.MxModel |
| umxSummary.MxModel.ACE |
umxSummaryACE |
| umxSummary.MxModel.ACEcov |
umxSummaryACEcov |
| umxSummary.MxModel.CP |
umxSummaryCP |
| umxSummary.MxModel.GxE |
umxSummaryGxE |
| umxSummary.MxModel.IP |
umxSummaryIP |
| umxSummaryACE |
umxSummaryACE |
| umxSummaryACEcov |
umxSummaryACEcov |
| umxSummaryCP |
umxSummaryCP |
| umxSummaryGxE |
umxSummaryGxE |
| umxSummaryIP |
umxSummaryIP |
| umxThresholdMatrix |
umxThresholdMatrix: Helper makes a complete threshold matrix needed in ordinal models. |
| umxTwoStage |
umxTwoStage |
| umxUnexplainedCausalNexus |
umxUnexplainedCausalNexus |
| umxValues |
umxValues: Set values in RAM model, matrix, or path |
| umx_add_variances |
umx_add_variances |
| umx_aggregate |
umx_aggregate |
| umx_APA_model_CI |
umx_APA_model_CI |
| umx_APA_pval |
umx_APA_pval |
| umx_apply |
umx_apply |
| umx_as_numeric |
umx_as_numeric |
| umx_check |
umx_check |
| umx_checkpoint |
umx_set_checkpoint |
| umx_check_model |
umx_check_model |
| umx_check_names |
umx_check_names |
| umx_check_OS |
umx_check_OS |
| umx_check_parallel |
umx_check_parallel |
| umx_cont_2_quantiles |
umx_cont_2_quantiles |
| umx_cor |
umx_cor |
| umx_cov2raw |
Turn a cov matrix into raw data with umx_cov2raw |
| umx_cov_diag |
umx_cov_diag |
| umx_default_option |
umx_default_option |
| umx_drop_ok |
umx_drop_ok |
| umx_explode |
umx_explode - like the php function 'explode' |
| umx_explode_twin_names |
umx_explode_twin_names |
| umx_factor |
umxFactor |
| umx_find_object |
umx_find_object |
| umx_fix_first_loadings |
umx_fix_first_loadings |
| umx_fix_latents |
umx_fix_latents |
| umx_fun_mean_sd |
umx_fun |
| umx_get_bracket_addresses |
get mat[r,c] style cell address from an mxMatrix |
| umx_get_checkpoint |
umx_get_checkpoint |
| umx_get_cores |
umx_get_cores |
| umx_get_optimizer |
umx_get_optimizer |
| umx_get_options |
umx_get_options |
| umx_grep |
umx_grep |
| umx_has_been_run |
umx_has_been_run |
| umx_has_CIs |
umx_has_CIs |
| umx_has_means |
umx_has_means |
| umx_has_square_brackets |
umx_has_square_brackets |
| umx_install_OpenMx |
install.OpenMx |
| umx_is_cov |
umx_is_cov |
| umx_is_endogenous |
umx_is_endogenous |
| umx_is_exogenous |
umx_is_exogenous |
| umx_is_MxData |
umx_is_ordered |
| umx_is_MxMatrix |
umx_is_MxMatrix |
| umx_is_MxModel |
umx_is_MxModel |
| umx_is_ordered |
umx_is_ordered |
| umx_is_RAM |
umx_is_RAM |
| umx_lower2full |
umx_lower2full |
| umx_make |
umx_make umx using devtools |
| umx_make_bin_cont_pair_data |
umx_make_bin_cont_pair_data |
| umx_make_fake_data |
umx_make_fake_data |
| umx_make_MR_data |
Simulate Mendelian Randomization data |
| umx_make_sql_from_excel |
umx_make_sql_from_excel |
| umx_make_TwinData |
umx_make_TwinData: Simulate twin data with control over A, C, E, and moderation |
| umx_match.arg |
umx_default_option |
| umx_means |
umx_means |
| umx_merge_CIs |
umx_merge_CIs |
| umx_move_file |
umx_move_file |
| umx_msg |
umx_msg |
| umx_names |
umx_names |
| umx_object_as_str |
umx_object_as_str |
| umx_open |
umx_open |
| umx_open_CRAN_page |
Open the CRAN page for a package |
| umx_pad |
Pad an Object with NAs |
| umx_paste_names |
umx_paste_names |
| umx_pb_note |
umx_pb_note |
| umx_print |
umx_print |
| umx_read_lower |
Read lower-triangle of data matrix from console or file |
| umx_rename |
umx_rename |
| umx_rename_file |
umx_rename_file |
| umx_reorder |
umx_reorder |
| umx_residualize |
umx_residualize |
| umx_rot |
umx_rot |
| umx_round |
umx_round |
| umx_r_test |
umx_r_test |
| umx_scale |
umx_scale |
| umx_scale_wide_twin_data |
umx_scale_wide_twin_data |
| umx_set_auto_plot |
umx_set_auto_plot |
| umx_set_auto_run |
umx_set_auto_run |
| umx_set_checkpoint |
umx_set_checkpoint |
| umx_set_condensed_slots |
umx_set_condensed_slots |
| umx_set_cores |
umx_set_cores |
| umx_set_optimizer |
umx_set_optimizer |
| umx_set_plot_format |
umx_set_plot_format |
| umx_set_table_format |
umx_set_table_format |
| umx_show |
umx_show |
| umx_standardize_ACE |
umx_standardize_ACE |
| umx_standardize_ACEcov |
umx_standardize_ACEcov |
| umx_standardize_CP |
umx_standardize_CP |
| umx_standardize_IP |
umx_standardize_IP |
| umx_standardize_RAM |
umx_standardize_RAM |
| umx_string_to_algebra |
umx_string_to_algebra |
| umx_swap_a_block |
umx_swap_a_block |
| umx_time |
umx_time |
| umx_trim |
umx_trim |
| umx_write_to_clipboard |
umx_write_to_clipboard |
| us_skinfold_data |
Anthropometric data on twins |
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