Node-class              Node-class
TreeMan-class           TreeMan-class
TreeMen-class           TreeMen-class
addTip                  Add tip to a tree
as-TreeMen              Convert list to a TreeMen
cTrees                  cTrees
calcDstBLD              Calculate the BLD between two trees
calcDstMtrx             Calculate the distance matrix
calcDstRF               Calculate the Robinson-Foulds distance between
                        two trees
calcDstTrp              Calculate the triplet distance between two
                        trees
calcFrPrp               Calculate evolutionary distinctness
calcNdBlnc              Calculate the balance of a node
calcNdsBlnc             Calculate the balances of all nodes
calcOvrlp               Calculate phylogenetic overlap
calcPhyDv               Calculate phylogenetic diversity
getNdAge                Get age
getNdKids               Get children IDs
getNdLng                Get lineage
getNdPrid               Get pre-nodes to root
getNdPtid               Get post-nodes to tips
getNdSlt                Get a node slot
getNdSstr               Get sister id
getNdsAge               Get ages for multiple nodes
getNdsKids              Get children IDs for multiple nodes
getNdsLng               Get lineage for multiple nodes
getNdsPrid              Get pre-nodes to root for multiple nodes
getNdsPtid              Get post-nodes to tips for multiple nodes
getNdsSlt               Get a node slot for multiple nodes
getNdsSstr              Get sister id
getOtgrp                Get outgroup
getPath                 Get path between nodes
getPrnt                 Get parent
getSpnAge               Get age range
getSpnsAge              Get age ranges for multiple nodes
getSubtree              Get subtree
getTxnyms               Get node id(s) for txonyms
mammals                 Phylogenetic tree of Mammalia
pinTips                 Pin tips to a tree
randTree                Generate a random tree
readTree                Read a Newick tree
rmTip                   Remove tip from a tree
setAge                  Set the age of a tree
setNdID                 Set the ID of a node
setNdOther              Set a user defined slot
setNdSpn                Set the branch length of a specific node
setNdsID                Set the IDs of multiple nodes
setNdsOther             Set a user defined slot for multiple nodes
setNdsSpn               Set the branch lengths of specific nodes
setPD                   Set the phylogenetic diversity
setTol                  Set the extinction tolerance
treeman-package         Phylogenetic Tree Manipulation
viz                     Method viz
writeTree               Write a Newick tree
