# Bootstrap Methods for 'ToxCast' High Throughput Screening Data

## Documentation for package ‘toxboot’ version 0.1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

dat1000 | Bootstrap results for m4id = 9057756 using 1000 replicates
dat10000 | Bootstrap results for m4id = 9057756 using 10000 replicates
erl3data | Concentration response data from 200 ER assay curves
erl5data | Fit parameters, model selection, and hit calls from 200 ER assay curves
gnls_curve | Gain Loss Curve.
hill_curve | Hill Curve.
listTonumeric | Convert x to numeric if x is a list.
nullToNA | Replace NULL values with NA.
toxboot | Main function to sample, fit, and write results to mongoDB
Toxboot configuration functions | Functions for configuring the toxboot package
toxbootConf | Functions for configuring the toxboot package
toxbootConfList | Functions for configuring the toxboot package
toxbootConfLoad | Functions for configuring the toxboot package
toxbootConfReset | Functions for configuring the toxboot package
toxbootConfSave | Functions for configuring the toxboot package
toxbootConnectMongo | Setup connection to toxboot MongoDB
toxbootGetMongoFields | Query mongoDB and get requested fields
toxbootGetMySQLFields | Function to query toxboot results from MySQL
toxbootGetOpts | DEPRECATED
toxbootHitParamCI | Performs Hit Call and Model Winner Selection on Bootstrap Results
toxbootmc | Filter and multicore wrapper for 'toxboot'
toxbootMongoCount | Get number of documents that match query.
toxbootMysqlCreateTable | Function to create properly formatted toxboot table in MySQL
toxbootProjectionBuild | Build projection for toxboot MongoDB
toxbootQueryBuild | Build query for toxboot MongoDB
toxbootQueryToxCast | Query ToxCast and format data to pass to 'toxboot'
toxbootReplicates | Generates bootstrap samples of dose response data
toxbootSetOpts | DEPRECATED
toxbootWriteMongo | Write bootstrap results to mongoDB