Functions to Work with NCBI Accessions and Taxonomy

Documentation for package ‘taxonomizr’ version 0.2.2

accessionToTaxa	Convert accessions to taxa
condenseTaxa	Condense a taxa table for a single read
getAccession2taxid	Download accession2taxid files from NCBI
getId	Find a given taxa by name
getNamesAndNodes	Download names and nodes files from NCBI
getTaxonomy	Get taxonomic ranks for a taxa
lastNotNa	Return last not NA value
read.accession2taxid	Read NCBI accession2taxid files
read.names	Read NCBI names file
read.nodes	Read NCBI nodes file
streamingRead	Process a large file piecewise
trimTaxa	Trim columns from taxa file