DEGeneExpr.default      Creation of DEGenesExpr object.
FactorNetworks.default
                        Function to create an object of class
                        FactorNetworks
FilterEdges.FactorNetworks
                        Filter edges in FactorNetworks
FilterEdges.SIMoNeNet   Filter edges in SIMoNeNet
FilterEdges.ShortPathSTRINGNet
                        Filter edges in ShortPathSTRINGNet
MultiDEGeneExpr.default
                        Function to create an object of class
                        MultiDEGeneExpr
MultiNetworks.default   Function to create an object of class
                        MultiNetworks
SIMoNeNet.default       Function to create object of class SIMoneNet
STRINGNet.default       Function to create an object of class STRINGNet
ShortPathSTRINGNet.default
                        Function to create object of class
                        ShortPathSTRINGNet
WGCNANet.default        Function to create an object of class WGCNANet
addFactorGraphsToCytoscape
                        Add FactorNetworks object to Cytoscape
addGraphToCytoscape     Add network to Cytoscape
addMultiGraphToCytoscape
                        Add MultiNetworks to Cytoscape
addNetworkStyle         Add network style to Cytoscape
addSIMoNeNetMappings    Add Cytoscape mapping for SIMoNeNet
addSTRINGNetMappings    Add Cytoscape mapping for STRINGNet
addShortPathSTRINGNetMappings
                        Add Cytoscape mapping for ShortPathSTRINGNet
addSkeletonDefaults     Add default values for Cytoscape styles
addSkeletonMappings     Add default mappings for Cytoscape styles
addWGCNANetMappings     Add Cytoscape mapping for WGCNANet
applyLayout             Apply layout to a network in Cytoscape
applyStyle              Apply style to a network in Cytoscape
as.igraph.stringgaussnet
                        Convert stringgaussnet network into igraph
checkCytoscapeRunning   Check Cytoscape running
compareFactorNetworks   Compare levels of FactorNetworks
compareGaussNetworks    Compare gaussian networks
computeCombinedScores   Compute STRING combined scores
computeSimilarities     Compute similarities for WGCNA
convertToDistGraph      Convert to distance graph from STRINGNet
export.SIMoNeNet        Export SIMoNeNet
export.STRINGNet        Export STRINGNet
export.ShortPathSTRINGNet
                        Export ShortPathSTRINGNet
export.WGCNANet         Export WGCNANet
getGenesInformations    Get gene annotations
getMartDatasets         Gert maRt datasets
getSIMoNeNet            Infer SIMoNe network from expression data
getSTRINGNet            Get STRING network from gene identifiers
getShortestPaths        Get shortest paths between given nodes in
                        STRING network.
getWGCNANet             Infer WGCNA network from expression data
pickSIMoNeParam         Pick SIMoNe parameters
pickWGCNAParam          Pick WGCNA parameters
plot.FactorNetworks     Plot FactorNetworks
plot.SIMoNeNet          Plot SIMoNeNet
plot.WGCNANet           Plot WGCNANet
resetCytoscapeSession   Reset Cytoscape session
saveCytoscapeSession    Save Cytoscape session
selectInteractionTypes
                        Select interaction sources in STRINGNet object
stringgaussnet-package
                        stringgaussnet
