spaMM-package	spaMM
.noRanef	spaMM-internal
adjacency	autoregressive
AIC	extractors
AIC.HLfit	extractors
anova	anova.HLfit
anova.HLfit	anova.HLfit
arabidopsis	arabidopsis
asStandardFormula	spaMM-internal
as_call_family	spaMM-internal
Bartlett.robust	spaMM-internal
Beta	spaMM-internal
binomialize	multinomial
blackcap	blackcap
calc.plot.dims	spaMM-internal
calc.w.resid	spaMM-internal
calcD2hDv2	spaMM-internal
calcNewCorrs	spaMM-internal
calcPHI	spaMM-internal
calcPredVar	spaMM-internal
calcRanefPars	spaMM-internal
calcResidVar	spaMM-internal
calcUniqueGeo	spaMM-internal
calc_APHLs_from_ZX	PLS-internals
calc_CARdispGammaGLM	spaMM-internal
calc_dispGammaGLM	spaMM-internal
calc_etaGLMblob	spaMM-internal
calc_logdisp_cov	spaMM-internal
calc_maxrange	spaMM-internal
calc_sXaug_Re	PLS-internals
calc_wAugX	spaMM-internal
canonizeRanPars	spaMM-internal
CAR	autoregressive
checkDistMatrix	spaMM-internal
checkRandLink	spaMM-internal
checkRandLinkS	spaMM-internal
checkRespFam	spaMM-internal
Cholwrap	spaMM-internal-Rcpp
clean_cs	spaMM-internal
coef.corMatern	spaMM-internal
coef<-.corMatern	spaMM-internal
COMPoisson	COMPoisson
COMP_dnu_objfn	COMPoisson-internal
COMP_maxn	COMPoisson-internal
COMP_Z	COMPoisson-internal
COMP_Z_lfacn	COMPoisson-internal
COMP_Z_n	COMPoisson-internal
COMP_Z_n2	COMPoisson-internal
COMP_Z_n3	COMPoisson-internal
COMP_Z_ratio	COMPoisson-internal
confint	confint
confint.HLfit	confint
corFactor.corMatern	spaMM-internal
corMatern	corMatern
corMatrix.corMatern	spaMM-internal
Corr	extractors
corr.notEQL.lambda	spaMM-internal
corrHLfit	corrHLfit
corrHLfit_body	spaMM-internal
corrMatrix	corrMatrix
corrMM.LRT	spaMM-internal
crack	spaMM-internal
create_sXaug_baseDense_QRP_scaled	PLS-internals
create_sXaug_EigenDense_QRP_scaled	PLS-internals
create_sXaug_EigenSparse_LDLP_scaled	PLS-internals
create_sXaug_EigenSparse_LDL_scaled	PLS-internals
create_sXaug_EigenSparse_LLP_scaled	PLS-internals
create_sXaug_EigenSparse_QRP_scaled	PLS-internals
create_sXaug_EigenSparse_QR_scaled	PLS-internals
create_sXaug_Matrix_cholP_scaled	PLS-internals
crossprodCpp	spaMM-internal-Rcpp
d2mudeta2fn	spaMM-internal
dCOMP	COMPoisson-internal
def_AUGI0_ZX_sparsePrecision	PLS-internals
def_sXaug_baseDense_QRP_scaled	PLS-internals
def_sXaug_EigenDense_QRP_scaled	PLS-internals
def_sXaug_EigenDense_QR_scaled	PLS-internals
def_sXaug_EigenSparse_LDLP_scaled	PLS-internals
def_sXaug_EigenSparse_LDL_scaled	PLS-internals
def_sXaug_EigenSparse_LLP_scaled	PLS-internals
def_sXaug_EigenSparse_QRP_scaled	PLS-internals
def_sXaug_EigenSparse_QR_scaled	PLS-internals
def_sXaug_Matrix_cholP_scaled	PLS-internals
def_sXaug_Matrix_QRP_scaled	PLS-internals
designL.from.Corr	designL.from.Corr
deviance	extractors
deviance.HLfit	extractors
dev_resids	extractors
Dim.corMatern	spaMM-internal
dispFn	spaMM-internal
dispInv	spaMM-internal
Earth	make.scaled.dist
eval.corrEst.args	spaMM-internal
eval.update.call	spaMM-internal
eval_gain_LevM_GLM	spaMM-internal
extract.check.coords	spaMM-internal
extractors	extractors
e_LevenbergMsolveCpp	spaMM-internal-Rcpp
filled.mapMM	mapMM
findbarsMM	spaMM-internal
findOffset	spaMM-internal
findplus	spaMM-internal
findSpatial	spaMM-internal
fitme	fitme
fitme_body	spaMM-internal
fitted	extractors
fitted.HLfit	extractors
fitted.HLfitlist	multinomial
fit_as_sparsePrecision	PLS-internals
fit_as_ZX	PLS-internals
fixedLRT	fixed.LRT
fixef	extractors
fixef.HLfit	extractors
freight	freight
fullrho	spaMM-internal
Gamma	inverse.Gamma
generateInitPhi	spaMM-internal
generateName	spaMM-internal
getCall.HLfit	spaMM-internal
getCovariate.corMatern	spaMM-internal
getDistMat	extractors
getgroups	spaMM-internal
getHLfit	spaMM-internal
getPar	spaMM-internal
getProcessed	spaMM-internal
getValidData	spaMM-internal
get_any_IC	extractors
get_beta_cov_any_version	spaMM-internal
get_fixefVar	predict
get_from_MME	PLS-internals
get_from_MME.AUGI0_ZX_sparsePrecision	PLS-internals
get_from_MME.default	PLS-internals
get_from_MME.sparseMatrix	PLS-internals
get_from_MME.sXaug_baseDense_QRP_scaled	PLS-internals
get_from_MME.sXaug_EigenDense_QRP_scaled	PLS-internals
get_from_MME.sXaug_EigenDense_QR_scaled	PLS-internals
get_from_MME.sXaug_EigenSparse_LDLP_scaled	PLS-internals
get_from_MME.sXaug_EigenSparse_LDL_scaled	PLS-internals
get_from_MME.sXaug_EigenSparse_LLP_scaled	PLS-internals
get_from_MME.sXaug_EigenSparse_QRP_scaled	PLS-internals
get_from_MME.sXaug_EigenSparse_QR_scaled	PLS-internals
get_from_MME.sXaug_Matrix_cholP_scaled	PLS-internals
get_from_MME.sXaug_Matrix_QRP_scaled	PLS-internals
get_from_MME_default	PLS-internals
get_from_MME_default.Matrix	PLS-internals
get_from_MME_default.matrix	PLS-internals
get_HLCorcall	spaMM-internal
get_intervals	predict
get_LSmatrix	spaMM-internal
get_methods_ranefs	spaMM-internal
get_predCov_var_fix	predict
get_predVar	predict
get_residVar	predict
get_respVar	predict
get_RLRTSim_args	extractors
get_valid_beta_coefs	spaMM-internal
get_ZAlist	spaMM-internal
get_ZALMatrix	extractors
glm.reformat	spaMM-internal
good-practice	good-practice
HLCor	HLCor
HLCor.obj	spaMM-internal
HLCor_body	spaMM-internal
HLfit	HLfit
HLfit.obj	spaMM-internal
HLfit_body	spaMM-internal
HLframes	spaMM-internal
HL_process.args	spaMM-internal
HL_strictify	spaMM-internal
Initialize.corMatern	spaMM-internal
initialize_v_h	spaMM-internal
internal_LRT	spaMM-internal
intervals	predict
inverse.Gamma	inverse.Gamma
is.identity	spaMM-internal
landMask	seaMask
largeLambdaMessages	spaMM-internal
legend_lambda	spaMM-internal
LevenbergMsolveCpp	spaMM-internal-Rcpp
LevenbergMsolve_Matrix	spaMM-internal-Rcpp
LevenbergMstepCallingCpp	spaMM-internal
leverages	spaMM-internal-Rcpp
LevMar_cpp	PLS-internals
LevPerturbedQCpp	spaMM-internal-Rcpp
lmwithQR	PLS-internals
lmwithQRP	PLS-internals
lmwith_sparse_LDLp	PLS-internals
lmwith_sparse_LLp	PLS-internals
lmwith_sparse_QRp	PLS-internals
Loaloa	Loaloa
locoptim	spaMM-internal
LogAbsDetCpp	spaMM-internal-Rcpp
LogAbsDetWrap	spaMM-internal
logDet.corMatern	spaMM-internal
logLik	extractors
logLik.HLfit	extractors
logLik.HLfitlist	multinomial
LRT	anova.HLfit
makeCheckGeoMatrices	spaMM-internal
makeCovEst1	spaMM-internal
makeCovEst2	spaMM-internal
makeLowerUpper	spaMM-internal
makenewname	spaMM-internal
makeTicks	spaMM-internal
make_scaled_dist	make.scaled.dist
make_Xscal	PLS-internals
mapMM	mapMM
Matern	Matern.corr
Matern.corr	spaMM-internal
MaternCorr	Matern.corr
MaternCorr.default	Matern.corr
MaternCorr.ff	spaMM-internal
Matrix_times_Dvec	spaMM-internal
merge_parlist	spaMM-internal
modify_list	spaMM-internal
muetafn	spaMM-internal
multi	multinomial
multinomial	multinomial
negbin	negbin
nextPoints	spaMM-internal
niceLabels	spaMM-internal
Nmatrix	scotlip
nobarsMM	spaMM-internal
nobarsMM_	spaMM-internal
nobarsNooffset	spaMM-internal
noNonSpatialbarsMM	spaMM-internal
noOffset	spaMM-internal
noOffset_	spaMM-internal
nuFn	spaMM-internal
nuInv	spaMM-internal
oceanmask	seaMask
overcat	spaMM-internal
parseBars	spaMM-internal
pastefrom	spaMM-internal
phiHGLM	phiHGLM
plot	plot.HL
plot.HLfit	plot.HL
plotScale	spaMM-internal
PLS-internals	PLS-internals
post_process_family	spaMM-internal
predict	predict
predict.HLfit	predict
Predictor	Predictor
preprocess	spaMM-internal
preprocess_fix_corr	predict
print	summary.HL
print.arglist	spaMM-internal
print.fixedLRT	summary.HL
print.HLfit	summary.HL
print.HLfitlist	summary.HL
print.predictions	spaMM-internal
print.predictor	spaMM-internal
print.vcov.HLfit	spaMM-internal
process_resglm_list	spaMM-internal
provide_init_lambdas	spaMM-internal
pseudoSolvediag	spaMM-internal-Rcpp
QRsolveWrap	PLS-internals
QRwrap	spaMM-internal-Rcpp
ranef	extractors
ranef.HLfit	extractors
RcppChol	spaMM-internal-Rcpp
Rcpp_chol_R	PLS-internals
Rcpp_COMP_Z	COMPoisson-internal
Rcpp_d2hdv2	spaMM-internal-Rcpp
Rcpp_Sig	spaMM-internal-Rcpp
recalc.corMatern	spaMM-internal
residuals	extractors
residuals.HLfit	extractors
resize_lambda	spaMM-internal
rhoFn	spaMM-internal
rhoInv	spaMM-internal
safesolve.qr.matrix	spaMM-internal
safesolve.qr.vector	spaMM-internal
salamander	salamander
scotlip	scotlip
seaMask	seaMask
seeds	seeds
selectLoglfn	spaMM-internal
setControl	spaMM-internal
setProcessed	spaMM-internal
Sigwrapper	spaMM-internal
Sig_times_b	spaMM-internal
simulate	simulate.HLCor
simulate.HLfit	simulate.HLCor
simulate.HLfitlist	simulate.HLCor
singularSigmaMessagesStop	spaMM-internal
slashTerms	spaMM-internal
solveWrap.matrix	spaMM-internal
solveWrap.vector	spaMM-internal
spaMM	spaMM
spaMM-conventions	spaMM-conventions
spaMM.colors	spaMMcolors
spaMM.filled.contour	spaMM.filled.contour
spaMM.getOption	options
spaMM.options	options
spaMMplot2D	mapMM
spaMM_Gamma	spaMM-internal
spaMM_glm	GLM.fit
spaMM_glm.fit	GLM.fit
sparse_LDLp_from_XtX	PLS-internals
sparse_LLp_from_XtX	PLS-internals
stripHLfit	stripHLfit
subbarsMM	spaMM-internal
summary	summary.HL
summary.fixedLRT	summary.HL
summary.HLfit	summary.HL
summary.HLfitlist	summary.HL
sweepZ1W	spaMM-internal-Rcpp
sym_eigen	sym_svd
tcrossprodCpp	spaMM-internal-Rcpp
theta.mu.canonical	spaMM-internal
theta.mu.conjugate	spaMM-internal
tryCatch.W.E	spaMM-internal
ULI	spaMM-internal
update	update
update.HLfit	update
validData	spaMM-internal
Variogram.corMatern	spaMM-internal
vcov	extractors
vcov.HLfit	extractors
wafers	wafers
welding	welding
worldcountries	seaMask
ZtWZ	spaMM-internal-Rcpp
ZWZt	spaMM-internal-Rcpp
