# Genetic Simulation Engine

## Documentation for package ‘skeleSim’ version 0.9.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

skeleSim-package | Genetic simulation engine
analyses.check | Check all simulation parameters
analysis.funcs | Analysis functions for skeleSim parameter objects
analysisFunc | Analysis functions for skeleSim parameter objects
calcChordDist | Analysis functions for skeleSim parameter objects
currentLabel | SkeleSim internal functions
currentScenario | SkeleSim internal functions
fastsimcoal.params | fastsimcoal Parameters Class
fastsimcoal.params-class | fastsimcoal Parameters Class
formatOverallStats | Analysis functions for skeleSim parameter objects
fsc.histEvCheck | Check parameters for fastsimcoal
fsc.histEvConverges | Check parameters for fastsimcoal
fsc.loadScenario | Load skeleSim scenario parameters for fastsimcoal
fsc.run | Run fastsimcoal
fsc.scenarioCheck | Check parameters for fastsimcoal
fsc.write | Write fastsimcoal files
gen.scenario.check | Check all simulation parameters
getGammaMutRates | Get a Vector of Randomly Chosen Mutation Rates
globalAnalysis | Analysis functions for skeleSim parameter objects
hapSmryFunc | Analysis functions for skeleSim parameter objects
loadResultsMatrix | Analysis functions for skeleSim parameter objects
locusAnalysisGenotypes | Analysis functions for skeleSim parameter objects
locusAnalysisHaplotypes | Analysis functions for skeleSim parameter objects
non.scenario.check | Check all simulation parameters
overall.check | Check all simulation parameters
pairwiseAnalysis | Analysis functions for skeleSim parameter objects
rmetasim.params-class | rmetasim Parameters Class
rms.convert | Extract genetic data from landscape object
rms.init.landscape | Initialize a landscape object
rms.init.landscape.func | Initialize a landscape object
rms.run | Run rmetasim
rms.scenarioCheck | Check parameters for rmetasim
rms.write | Write metasim file
runSim | Run simulation
scenario.params | skeleSim Parameters Class
scenario.params-class | skeleSim Parameters Class
skeleSim | Genetic simulation engine
skeleSim.checks | Check all simulation parameters
skeleSim.classes | skeleSim Parameters Class
skeleSim.internals | SkeleSim internal functions
skeleSim.params | skeleSim Parameters Class
skeleSim.params-class | skeleSim Parameters Class
skeleSimGUI | GUI for skeleSim system