getNeuronStatus         Read in the manual classifications of neurons
                        from SCALPEL.
getScalpel              Read in results from SCALPEL.
getScalpelStep0         Read in results from Step 0 of SCALPEL.
getScalpelStep1         Read in results from Step 1 of SCALPEL.
getScalpelStep2         Read in results from Step 2 of SCALPEL.
getScalpelStep3         Read in results from Step 3 of SCALPEL.
getY                    Read in Y matrix for SCALPEL.
plotBrightest           Plot the most active frames for a given neuron.
plotCandidateFrame      Plot preliminary dictionary element from Step 1
                        of SCALPEL and its corresponding frame.
plotCluster             Plot a summary of a given cluster from Step 2
                        of SCALPEL.
plotFrame               Plot a frame of the video.
plotResults             Plot both the spatial and temporal components
                        from Step 3 of SCALPEL.
plotResultsAllLambda    Plot both the spatial and temporal components
                        for the sequence of lambda values from Step 3
                        of SCALPEL.
plotSpatial             Plot spatial components from Steps 2 or 3 of
                        SCALPEL.
plotTemporal            Plot temporal components from Step 3 of
                        SCALPEL.
plotThresholdedFrame    Plot a frame of the video with shading.
plotVideoVariance       Plot a summary of the fluorescence in the
                        video.
reviewNeurons           Manually classify the identified neurons from
                        SCALPEL.
reviewNeuronsInteractive
                        Manually classify the identified neurons from
                        SCALPEL.
reviewNeuronsMoreFrames
                        Save additional frames for manually classifying
                        the identified neurons from SCALPEL.
reviewOverlappingNeurons
                        Save additional frames for overlapping neurons
                        from SCALPEL.
scalpel                 Perform entire SCALPEL pipeline.
scalpel-package         scalpel: A package for processing calcium
                        imaging data.
scalpelStep0            Perform Step 0 of SCALPEL.
scalpelStep1            Perform Step 1 of SCALPEL.
scalpelStep2            Perform Step 2 of SCALPEL.
scalpelStep3            Perform Step 3 of SCALPEL.
summary                 Summarize results from SCALPEL pipeline.
updateNeurons           Update the classifications of neurons from
                        SCALPEL.
updateNeuronsInteractive
                        Update the classifications of specified neurons
                        from SCALPEL.
updateThreshold         Review and update the chosen threshold for
                        image segmentation in Step 1 of SCALPEL.
