bifurcation.diagram     plot of an haplotype bifurcation diagram
calc_ehh                EHH and iHH computations at a given core SNP
calc_ehhs               EHHS and iES computations at a given core SNP
data2haplohh            Converting data into an object of class haplohh
distribplot             Distribution of standardized iHS or Rsb values
haplohh-class           Class '"haplohh"'
haplohh_cgu_bta12       Example of an 'haplohh' object
ies2rsb                 Compute Rsb (standardized ratio of iES from two
                        populations)
ies2xpehh               Compute xpEHH (standardized ratio of iES from
                        two populations) as described in Sabeti et al.
                        (2007)
ihh2ihs                 Compute iHS (standardized iHH)
ihsplot                 Plot iHS over a genome
make.example.files      Creating example input files
rehh-package            Searching for footprints of selection using
                        Haplotype Homozygosity based tests
rsbplot                 Plot Rsb over a genome
scan_hh                 Computing EHH based statistics over a whole
                        chromosome
xpehhplot               Plot XPEHH over a genome
