AASim                   Compute Adamic-Adar Index Between Two Nodes in
                        PPI Network
ComputeAllEvidences     Compute the Biological and Topological
                        Similarities Between Protein Pairs
FNPre                   Predict false negative interactions based on
                        topological similarities
GOKEGGSims              GO- and KEGG- based Similarities Between two
                        Genes
GOKEGGSimsFromFile      GO- and KEGG- based Similarities Between two
                        Genes
IntelliGOGeneSim        IntelliGO Semantic Similarity Between two Genes
JaccardSim              Compute Jaccard Index Between Two Nodes in PPI
                        Network
KEGGSim                 KEGG Semantic Similarity Between two Genes
RASim                   Compute Resource Allocation Index Between Two
                        Nodes in PPI Network
SVMPredict              Predict false interactions using a training set
SVMTrain                Using Golden Standard Data Sets to Train an SVM
                        Classifier
TCSSGeneSim             Topological Clustering Semantic
                        Similarity(TCSS) Between two Genes
TopologicSims           Compute topological similarities from user
                        input file
ppiPre-package          Predicting protein-protein interactions
