burnin.phybreak         MCMC updating of a phybreak-object.
get.phybreak            Accessing a phybreak object
infectorsets            Sampled infectors for each host in a
                        phybreak-object.
logLik.phybreak         Log-likelihood of a phybreak-object.
phybreak                Create a phybreak-object from data and prior
                        distributions.
phylotree               Maximum clade credibility tree.
plot.phybreak           Plotting a phybreak object.
sample.phybreak         Sampling from a phybreak MCMC-chain.
sim.phybreak            Outbreak simulation.
thin.phybreak           Remove posterior samples from a
                        phybreak-object.
transtree               Create a consensus transmission tree.
