paramlink-package	paramlink-package
addDaughter	modify
addMarker	markers
addOffspring	modify
addParents	modify
addSon	modify
all.equal.linkdat	linkdat.utils
allGenotypes	allGenotypes
ancestors	linkdat.utils
as.data.frame.linkdat	as.data.frame.linkdat
as.data.frame.linkres	linkres
as.matrix.linkdat	as.matrix.linkdat
branch	modify
breakLoops	loops
connectedComponents	Familias2linkdat
cousinPed	createPedigree
cousins	linkdat.utils
cousinsPed	createPedigree
createPedigree	createPedigree
descendants	linkdat.utils
dominant	dominant
doubleCousins	createPedigree
doubleFirstCousins	createPedigree
examineKinships	examineKinships
exclusionPower	exclusionPower
Familias2linkdat	Familias2linkdat
fast.grid	allGenotypes
findLoopBreakers	loops
findLoopBreakers2	loops
fullSibMating	createPedigree
geno.grid.subset	allGenotypes
getMarkers	markers
grandparents	linkdat.utils
halfCousinPed	createPedigree
halfCousinsPed	createPedigree
halfSibStack	createPedigree
IBDestimate	examineKinships
IBDtriangle	IBDtriangle
inbreeding	inbreeding
is.linkdat	is.linkdat
is.linkdat.list	is.linkdat
is.singleton	is.linkdat
jacquard	inbreeding
jacquard2	inbreeding
kinship.coeff	inbreeding
leaves	linkdat.utils
likelihood	likelihood
likelihood.linkdat	likelihood
likelihood.list	likelihood
likelihood.singleton	likelihood
likelihood_LINKAGE	likelihood
linkage.power	linkage.power
linkageSim	linkageSim
linkdat	linkdat
linkdat.utils	linkdat.utils
linkres	linkres
lod	lod
lod.peaks	lod.peaks
marker	markers
markerSim	markerSim
mendelianCheck	markers
mergePed	mergePed
merlin	merlin
merlinUnlikely	merlin
modifyMarker	markers
modifyMarkerMatrix	markers
modifyPedigree	modify
nephews_nieces	linkdat.utils
nuclearPed	createPedigree
offspring	linkdat.utils
oneMarkerDistribution	oneMarkerDistribution
paramlink	paramlink-package
parents	linkdat.utils
peakSummary	linkres
pedigreeLoops	loops
plot.linkdat	plot.linkdat
plot.linkres	linkres
plot.singleton	plot.linkdat
plotPedList	plotPedList
power.varyPar	linkage.power
print.linkdat	linkdat
print.linkdat.model	setModel
print.linkres	linkres
quadHalfFirstCousins	createPedigree
randomPed	randomPed
readDatfile	readDatfile
relabel	modify
related.pairs	linkdat.utils
relationLR	relationLR
removeIndividuals	modify
removeMarkers	markers
restore_linkdat	as.matrix.linkdat
setAvailable	setAvailable
setMap	markers
setMarkers	markers
setModel	setModel
setPlotLabels	setPlotLabels
siblings	linkdat.utils
simpleSim	simpleSim
singleton	linkdat
spouses	linkdat.utils
subset.linkdat	linkdat
summary.linkdat	linkdat
summary.linkres	linkres
summary.powres	linkage.power
swapAff	modify
swapAvailable	setAvailable
swapGenotypes	markers
swapSex	modify
tieLoops	loops
toyped	toyped
transferMarkerdata	markers
trim	modify
twoloops	twoloops
twoMarkerDistribution	twoMarkerDistribution
unrelated	linkdat.utils
write.linkdat	linkdat
Xped	Xped
