Familias2linkdat        Convert 'Familias' output to linkdat objects
IBDtriangle             IBD triangle plot
Xped                    Example pedigree with X-linked disease pattern.
allGenotypes            Genotype combinations
as.data.frame.linkdat   linkdat to data.frame conversion
as.matrix.linkdat       linkdat to matrix conversion
breakLoops              Pedigree loops
createPedigree          Create simple pedigrees
dominant                Example pedigree for linkage analysis: 23
                        individuals, 650 SNPs
examineKinships         Relatedness estimation
exclusionPower          Power of exclusion
inbreeding              Inbreeding coefficients and Jacquard
                        coefficients
is.linkdat              Is an object a linkdat object?
likelihood              Pedigree likelihood
linkage.power           Power of a linkage study
linkageSim              Simulate markers linked to a disease locus.
linkdat                 linkdat objects
linkdat.utils           linkdat utilities
linkres                 S3 methods for class 'linkres'.
lod                     Two-point LOD score
lod.peaks               LOD score peaks
marker                  Marker functions
markerSim               Marker simulation
mergePed                Merge two pedigrees
merlin                  MERLIN wrappers
modifyPedigree          Modify the pedigree of 'linkdat' objects
oneMarkerDistribution   Genotype probability distribution
paramlink-package       Parametric Linkage and Other Pedigree Analysis
                        in R
plot.linkdat            Plot pedigrees with genotypes
plotPedList             Plot a list of pedigrees.
randomPed               Random pedigree
readDatfile             Read dat file in LINKAGE format
relationLR              Relationship Likelihood Ratio
setAvailable            Functions for modifying availability vectors
setModel                Set, change or display the model parameters for
                        'linkdat' objects
setPlotLabels           Attach plot labels to a linkdat object
simpleSim               Unconditional marker simulation
toyped                  Toy pedigree for linkage analysis
twoMarkerDistribution   Genotype probability distribution
twoloops                A consanguineous pedigree
