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| applyEmptyImageDimensions | Apply Subsetting from Empty Image Dimensions |
| apply_empty_dim | Apply Subsetting from Empty Image Dimensions |
| boxplot.anlz | Boxplot of Values in an Image |
| boxplot.nifti | Boxplot of Values in an Image |
| breaker | Find Breaks for nifti Image Ploting |
| checkimg | Force object to filename |
| checkimg-method | Force object to filename |
| checkimg-methods | Force object to filename |
| checknii | Force object to filename with .nii extension |
| checknii-method | Force object to filename with .nii extension |
| checknii-methods | Force object to filename with .nii extension |
| checkniigz | Force object to filename with .nii.gz extension |
| checkniigz-method | Force object to filename with .nii.gz extension |
| checkniigz-methods | Force object to filename with .nii.gz extension |
| check_mask | Check Mask is Binary |
| check_mask_fail | Check Mask is Binary, Fail otherwise |
| check_nifti | Check if nifti image or read in a nifti image |
| check_nifti-method | Check if nifti image or read in a nifti image |
| check_nifti-methods | Check if nifti image or read in a nifti image |
| check_outfile | Check output filename |
| cog | Image Center of Gravity |
| colorbar | Add a colorbar to an ortho2 object |
| copyNIfTIHeader | Copy NIfTI Header to an array |
| datatype | Change Data type for img |
| datatyper | Change Data type for img |
| density.anlz | Density of Values in an Image |
| density.nifti | Density of Values in an Image |
| double_ortho | Double Orthographic Display |
| dropEmptyImageDimensions | Drop Empty Image Dimensions |
| drop_empty_dim | Drop Empty Image Dimensions |
| ensure_nii | Force object to filename with .nii extension |
| ensure_nii_gz | Force object to filename with .nii.gz extension |
| fast_readnii | Reading NIfTI images through RNifti |
| file_imgext | Get Image file extension |
| finite_img | Finite Image |
| finite_img-method | Finite Image |
| finite_img-methods | Finite Image |
| getEmptyImageDimensions | Get Empty Image Dimensions |
| get_empty_dim | Get Empty Image Dimensions |
| hist.anlz | Histogram of Values in an Image |
| hist.nifti | Histogram of Values in an Image |
| images2matrix | Transform set of images to matrix |
| img_indices | Retrieve Image Indices |
| maskEmptyImageDimensions | Make Mask from Empty Image Dimensions |
| mask_empty_dim | Make Mask from Empty Image Dimensions |
| mask_img | Mask nifti Image |
| mask_vals | Extract or Replace Values Inside a Mask |
| mask_vals-methods, | Extract or Replace Values Inside a Mask |
| mask_vals<- | Extract or Replace Values Inside a Mask |
| mask_vals<--method | Extract or Replace Values Inside a Mask |
| mean.anlz | Mean of Values in an Image |
| mean.nifti | Mean of Values in an Image |
| multi_overlay | Create Multi-Image Plot with Overlays |
| newnii | Resets image parameters for a copied nifti object |
| niftiarr | Make new nifti from array |
| nii.stub | Grab nii file stubname |
| ortho2 | Orthographic Display, added options |
| ortho_diff | Plot differences for Prediction and Gold Standard |
| parse_img_ext | Parse Image Extensions |
| quantile.anlz | Sample Quantiles |
| quantile.nifti | Sample Quantiles |
| quantile_img | Create Quantile Image |
| randomize_mask | Randomize Image based on Mask |
| readNIfTI2 | readNIfTI with default non-reorientation |
| readnii | readNIfTI with default non-reorientation |
| remake_img | Remake Image from Vector |
| remap_filename | Build Filename (usually for images) |
| replace_dropped_dimensions | Remake Dropped Dimensions |
| replace_outside_surface | Replace Values Outside Surface of image |
| rescale_img | Image Rescaler |
| robust_window | Window image based on quantiles of Image |
| same_dims | Check if Objects have Same Dimensions |
| tempimg | Create temporary nii.gz file |
| window_img | nifti image windower |
| writeNIfTI2 | writeNIfTI with default non-reoirientation |
| writenii | writeNIfTI with default non-reoirientation |
| xyz | Image Center of Gravity Wrapper |
| zero_pad | Zero pads an image |
| zlimmer | Find Image z-limits |
| zscore_img | Get Z-score over a margin of an img |