abc_smc_nltt            A function to perform Approximate Bayesian
                        Computation within an Sequential Markov Chain
                        (ABC-SMC), for diversification analysis of
                        phylogenetic trees.
exampleTrees            example trees to test the functionality of the
                        package
get_average_nltt_matrix
                        Get the average nLTT from a collection of
                        phylogenies
get_nltt_values         Collects the nLTT values of all phylogenies in
                        the melted/uncast/long form
get_phylogeny_nltt_matrix
                        Extract the nLTT matrix from a phylogeny
mcmc_nltt               Code to perform Metropolis-Hastings MCMC for a
                        diversification model, given a phylogenetic
                        tree. This function was used in the MEE paper
                        to calculate the likelihood reference
                        estimates.
nLTT-package            Package providing functions to visualize the
                        normalized Lineage-Through-Time statistic, and
                        calculate the difference between two nLTT
                        curves
nLTTstat                Calculate the difference between two normalized
                        Lineage-Through-Time curves, given two
                        phylogenetic trees.
nLTTstat_exact          Calculate the exact difference between two
                        normalized Lineage-Through-Time curves, given
                        two phylogenetic trees.
nltt_diff               Calculates the exact difference between the
                        lineage through time curves of tree1 & tree2
                        (normalized in time and for the number of
                        lineages)
nltt_diff_exact         Calculates the exact, difference between the
                        lineage through time curves of tree1 & tree2
                        (normalized in time and for the number of
                        lineages)
nltt_lines              Normalized version of the ape function
                        ltt.lines.
nltt_plot               Normalized version of the ape function ltt.plot
nltts_plot              Get the average nLTT from a collection of
                        phylogenies
stretch_nltt_matrix     Stretch matrix 'm' with a timestep resolution
                        of 'dt'
