Package: mrMLM
Type: Package
Title: Multi-Locus Random-SNP-Effect Mixed Linear Model for Genome-Wide
        Association Studies and Linkage Analyses
Version: 2.1
Date: 2017-02-08
Author: Wenlong Ren,Yuanli Ni,Shibo Wang,Yangjun Wen,Bo Huang and Yuanming Zhang
Maintainer: Yuanming Zhang<soyzhang@mail.hzau.edu.cn>
Description: Conduct multi-locus GWAS and multi-locus QTL mapping under the framework of random-SNP-effect mixed linear model (mrMLM). First, each position (or marker) on the genome is scanned by mrMLM algorithm. Bonferroni correction is replaced by a less stringent selection criterion for significant test. Then, all the markers (or QTL) that are potentially associated with the trait are included in a multi-locus model, their effects are estimated by empirical Bayes and true QTN or QTL are identified by likelihood ratio test.
Depends: gWidgets,gWidgetsRGtk2,RGtk2Extras,MASS
Imports: RGtk2,methods,openxlsx,stringr,qqman,ggplot2,lars,ncvreg
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2017-02-08 14:47:04 UTC; Administrator
Repository: CRAN
Date/Publication: 2017-02-09 07:02:00
Built: R 3.2.5; ; 2017-04-20 08:26:24 UTC; windows
