# Kinetic Evaluation of Chemical Degradation Data

## Documentation for package ‘mkin’ version 0.9.45

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

add_err | Add normally distributed errors to simulated kinetic degradation data
backtransform_odeparms | Functions to transform and backtransform kinetic parameters for fitting
DFOP.solution | Double First-Order in Parallel kinetics
endpoints | Function to calculate endpoints for further use from kinetic models fitted with mkinfit
FOCUS_2006_A | Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_B | Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_C | Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_D | Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_DFOP_ref_A_to_B | Results of fitting the DFOP model to Datasets A to B of FOCUS (2006)
FOCUS_2006_E | Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_F | Datasets A to F from the FOCUS Kinetics report from 2006
FOCUS_2006_FOMC_ref_A_to_F | Results of fitting the FOMC model to Datasets A to F of FOCUS (2006)
FOCUS_2006_HS_ref_A_to_F | Results of fitting the HS model to Datasets A to F of FOCUS (2006)
FOCUS_2006_SFO_ref_A_to_F | Results of fitting the SFO model to Datasets A to F of FOCUS (2006)
FOMC.solution | First-Order Multi-Compartment kinetics
geometric_mean | Calculate the geometric mean
HS.solution | Hockey-Stick kinetics
ilr | Function to perform isometric log-ratio transformation
invilr | Function to perform isometric log-ratio transformation
IORE.solution | Indeterminate order rate equation kinetics
mccall81_245T | Datasets on aerobic soil metabolism of 2,4,5-T in six soils
mkinds | A dataset class for mkin
mkinerrmin | Calculate the minimum error to assume in order to pass the variance test
mkinfit | Fit a kinetic model to data with one or more state variables
mkinmod | Function to set up a kinetic model with one or more state variables
mkinparplot | Function to plot the confidence intervals obtained using mkinfit
mkinplot | Plot the observed data and the fitted model of an mkinfit object
mkinpredict | Produce predictions from a kinetic model using specific parameters
mkinresplot | Function to plot residuals stored in an mkin object
mkinsub | Function to set up a kinetic submodel for one state variable
mkin_long_to_wide | Convert a dataframe from long to wide format
mkin_wide_to_long | Convert a dataframe with observations over time into long format
mmkin | Fit one or more kinetic models with one or more state variables to one or more datasets
plot.mkinfit | Plot the observed data and the fitted model of an mkinfit object
plot.mmkin | Plot model fits (observed and fitted) and the residuals for a row or column of an mmkin object
plot_sep | Plot the observed data and the fitted model of an mkinfit object
print.mkinds | Print mkinds objects
print.mkinmod | Print mkinmod objects
print.summary.mkinfit | Summary method for class "mkinfit"
schaefer07_complex_case | Metabolism data set used for checking the software quality of KinGUI
schaefer07_complex_results | Metabolism data set used for checking the software quality of KinGUI
SFO.solution | Single First-Order kinetics
SFORB.solution | Single First-Order Reversible Binding kinetics
summary.mkinfit | Summary method for class "mkinfit"
synthetic_data_for_UBA_2014 | Synthetic datasets for one parent compound with two metabolites
transform_odeparms | Functions to transform and backtransform kinetic parameters for fitting
[.mmkin | Subsetting method for mmkin objects