Basic Biological Sequence Analysis

Documentation for package ‘microseq’ version 1.0

microseq-package	Basic Biological Sequence Analysis
amplicon	Primer matching
cmalign	Multiple alignment using Infernal
Fasta	Read and write FASTA files
gregexpr	Extended 'gregexpr' with substring retrieval
microseq	Basic Biological Sequence Analysis
msalign	Multiple alignment
msaTrim	Trimming multiple sequence alignments
muscle	Multiple alignment using MUSCLE
plot.Fasta	Plotting and summary of 'Fasta' objects
readFasta	Read and write FASTA files
readFasta and writeFasta	Read and write FASTA files
readFastq	Read FASTQ files
reverseComplement	Reverse-complementation of DNA
summary.Fasta	Plotting and summary of 'Fasta' objects
translate	Translation according to the standard genetic code
writeFasta	Read and write FASTA files