arrange_obs             Sort columns of 'taxmap' objects
arrange_taxa            Sort columns of 'taxmap' objects
bryophytes_ex_data      Example dataset of bryophytes
contaminants            Example dataset of comtamination
diverging_palette       The defualt diverging color palette
extract_taxonomy        Extract taxonomy information from sequence
                        headers
filter_obs              Filter observations with a list of conditions
filter_taxa             Filter taxa with a list of conditions
genbank_ex_data         Fungal ITS Genbank refseq
hierarchies             Get classification of taxa
its1_ex_data            Example of ITS1 fungal data
layout_functions        Layout functions
metacoder               Metacoder
mutate_obs              Add columns to 'taxmap' objects
mutate_taxa             Add columns to 'taxmap' objects
n_obs                   Count observations in 'taxmap'
n_obs_1                 Count observation assigned in 'taxmap'
n_subtaxa               Get number of subtaxa
n_subtaxa_1             Get number of subtaxa
n_supertaxa             Get number of supertaxa
obs                     Get observations associated with taxa
obs_data                Return observation data from 'taxmap'
obs_data_colnames       Get column names of obs_data
parse_hmp_qiime         Parse HMP QIIME results
parse_mothur_summary    Parse mothur classification summary file
parse_taxonomy_table    Parse taxonomic data in a tsv/csv file
pr2_ex_data             Example of PR2 SSU data
primersearch            Use EMBOSS primersearch for in silico PCR
print.taxmap            Print a 'taxmap' object
qualitative_palette     The defualt qualitative color palette
quantative_palette      The defualt quantative color palette
rdp_ex_data             Example of RDP Archea data
read_fasta              Read a FASTA file
remove_redundant_names
                        Remove the redundant taxon names
roots                   Get root taxa
sample_frac_obs         Sample a proportion of observations from
                        'taxmap'
sample_frac_taxa        Sample a proportion of taxa from 'taxmap'
sample_n_obs            Sample n observations from 'taxmap'
sample_n_taxa           Sample n taxa from 'taxmap'
select_obs              Subset columns in a 'taxmap' object
select_taxa             Subset columns in a 'taxmap' object
silva_ex_data           Example dataset from SILVA
subtaxa                 Get all subtaxa of a taxon
supertaxa               Get all supertaxa of a taxon
taxmap                  Create an instance of 'taxmap'
taxon_data              Return taxon data from 'taxmap'
taxon_data_colnames     Get column names of taxon_data
taxonomic_sample        Recursivly sample a set of taxonomic
                        assignments
transmute_obs           Replace columns in 'taxmap' objects
transmute_taxa          Replace columns in 'taxmap' objects
unite_ex_data_1         Example of UNITE fungal ITS data
unite_ex_data_2         Example of UNITE fungal ITS data
unite_ex_data_3         Example of UNITE fungal ITS data
