# Easy Handling Discrete Time Markov Chains

## Documentation for package ‘markovchain’ version 0.6.9

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

markovchain-package | Easy Handling Discrete Time Markov Chains
!=-method | Class '"markovchain"'
*-method | Class '"markovchain"'
==-method | Class '"markovchain"'
absorbingStates | Various function to perform structural analysis of DTMC
absorbingStates-method | Class '"markovchain"'
assessOrder | Various functions to perform statistical inference of DTMC
assessStationarity | Various functions to perform statistical inference of DTMC
blanden | Mobility between income quartiles
canonicForm | Various function to perform structural analysis of DTMC
canonicForm-method | Class '"markovchain"'
coerce-method | Class '"markovchain"'
communicatingClasses | Various function to perform structural analysis of DTMC
conditionalDistribution | 'conditionalDistribution' of a Markov Chain
conditionalDistribution-method | Class '"markovchain"'
craigsendi | CD4 cells counts on HIV Infects between zero and six month
createSequenceMatrix | Function to fit a discrete Markov chain
ctmc-class | Class '"ctmc"'
ctmcFit | Function to fit a CTMC
dim-method | Class '"ctmc"'
dim-method | Class '"markovchain"'
dim-method | Class '"markovchainList"'
firstPassage | First passage across states
fitHigherOrder | Functions to fit a higher order Markov chain
fitHighOrderMultivarMC | Function to fit Higher Order Multivariate Markov chain
generatorToTransitionMatrix | Function to obtain the transition matrix from the generator.
HigherOrderMarkovChain-class | Class '"HigherOrderMarkovChain"'
holson | Holson data set
hommc | An S4 class for representing High Order Multivariate Markovchain (HOMMC)
hommc-class | An S4 class for representing High Order Multivariate Markovchain (HOMMC)
inferHyperparam | Function to infer the hyperparameters for Bayesian inference from an a priori matrix or a data set
initialize-method | Class '"ctmc"'
initialize-method | Class '"markovchain"'
is.accessible | Verify if a state j is reachable from state i.
is.irreducible | Function to check if a Markov chain is irreducible
kullback | Example from Kullback and Kupperman Tests for Contingency Tables
markovchain | Easy Handling Discrete Time Markov Chains
markovchain-class | Class '"markovchain"'
markovchainFit | Function to fit a discrete Markov chain
markovchainList-class | Class '"markovchainList"'
markovchainListFit | markovchainListFit
markovchainSequence | Function to generate a sequence of states from homogeneous Markov chains.
multinomialConfidenceIntervals | A function to compute multinomial confidence intervals of DTMC
name | Method to retrieve name of markovchain object
name-method | Method to retrieve name of markovchain object
name<- | Method to set name of markovchain object
name<--method | Method to set name of markovchain object
names-method | Class '"markovchain"'
names<--method | Class '"markovchain"'
period | Various function to perform structural analysis of DTMC
plot-method | Class '"markovchain"'
predict-method | Class '"markovchain"'
predict-method | Class '"markovchainList"'
predictiveDistribution | Function to compute the probability of observing a new data set, given a data set
preproglucacon | Preprogluccacon DNA protein bases sequences
print-method | Class '"markovchain"'
print-method | Class '"markovchainList"'
priorDistribution | Prior Distribution
rain | Alofi island daily rainfall
rctmc | Function to generate a sequence of random CTMC transitions.
recurrentClasses | Various function to perform structural analysis of DTMC
rmarkovchain | Function to generate a sequence of states from homogeneous or non-homogeneous Markov chains.
sales | Sales Demand Sequences
seq2freqProb | Functions to fit a higher order Markov chain
seq2matHigh | Functions to fit a higher order Markov chain
show-method | Function to display the details of hommc object
show-method | Class '"markovchain"'
show-method | Class '"markovchainList"'
sort-method | Class '"markovchain"'
states | Defined states of a transition matrix
states-method | Class '"ctmc"'
states-method | Defined states of a transition matrix
steadyStates | Stationary states of a 'markovchain' objeect
steadyStates-method | Class '"ctmc"'
steadyStates-method | Stationary states of a 'markovchain' objeect
summary-method | Class '"markovchain"'
t-method | Class '"markovchain"'
transientStates | Various function to perform structural analysis of DTMC
transientStates-method | Various function to perform structural analysis of DTMC
transition2Generator | Return the generator matrix for a corresponding transition matrix
transitionProbability | Function to get the transition probabilities from initial to subsequent states.
transitionProbability-method | Function to get the transition probabilities from initial to subsequent states.
verifyEmpiricalToTheoretical | Various functions to perform statistical inference of DTMC
verifyHomogeneity | Various functions to perform statistical inference of DTMC
verifyMarkovProperty | Various functions to perform statistical inference of DTMC
[-method | Class '"markovchain"'
[[-method | Class '"markovchainList"'
^-method | Class '"markovchain"'