QA_geno                 Name of the file containing genotypic (marker
                        scores) information.
QA_map                  Name of the file containing marker map
                        information
QA_pheno                Name of the file containing phenotypic
                        information
QA_sim                  Name of the file containing phenotypic
                        information
gwas.analysis           Performs GWAS analysis with five optional
                        models and different optional thresholds.
gwas.cross              Read genomic data to perform GWAS analyses.
linkdis.plots           Linkage Disequilibrium heatmap plot
mq.g.diagnostics        Performs molecular markers quality diagnostics.
pca.analysis            Principal Component Analysis.
