ips-package	ips-package
aliscore	aliscore
code.simple.gaps	code.simple.gaps
collapseUnsupportedEdges	collapseUnsupportedEdges
delete.gaps	deleteGaps
deleteEmptyCells	deleteEmptyCells
deleteGaps	deleteGaps
descendants	descendants
extractBEASTstats	ips-internal
extractMRBAYESstats	ips-internal
fillEndsWithN	trimEnds
fixNodes	fixNodes
gblocks	gblocks
ips	ips-package
ips.16S	ips.16S
ips.28S	ips.28S
ips.cox1	ips.cox1
ips.tree	ips.tree
mafft	mafft
mrbayes	mrbayes
mrbayes.mixed	mrbayes
multistate	multistate
multistateMCMC	multistate
multistateML	multistate
noi	noi
phylo2mafft	ips-internal
pis	pis
prank	prank
raxml	raxml
raxml.partitions	raxml.partitions
rbeauti	rbeauti
rbeauti.taxonset	ips-internal
read.beast	read.beast
read.beast.table	read.beast.table
read.fas	read.fas
read.mrbayes	read.beast
read.nex	read.fas
read.phy	read.fas
read.starbeast	read.beast
read.xml	ips-internal
sister	sister
terminal.clades	ips-internal
tipHeights	tipHeights
traitRate	traitRate
traitRateOutput	ips-internal
traitRateParams	ips-internal
trimEnds	trimEnds
unresolve.clade	ips-internal
write.fas	write.fas
write.nex	write.fas
write.partitioned.nex	write.partitioned.nex
write.phy	write.fas
